diff --git a/build/pkgs/cython/checksums.ini b/build/pkgs/cython/checksums.ini
index 7e9b0490f41..6e5583857fd 100644
--- a/build/pkgs/cython/checksums.ini
+++ b/build/pkgs/cython/checksums.ini
@@ -1,4 +1,5 @@
 tarball=Cython-VERSION.tar.gz
-sha1=1c0c6cb9ebb875e8769863e1720683b24a755a7c
-md5=f212574687a52706ff53738a64f91398
-cksum=1612385007
+sha1=5a557bd74d5781c4252675a2805ef2742e88b0cb
+md5=a899abaa48b68bb679aef45ceb4b89d3
+cksum=2101179202
+upstream_url=https://files.pythonhosted.org/packages/49/8a/6a4135469372da2e3d9f88f71c6d00d8a07ef65f121eeca0c7ae21697219/Cython-0.29.16.tar.gz
diff --git a/build/pkgs/cython/package-version.txt b/build/pkgs/cython/package-version.txt
index fe14ade44a2..a711eb84906 100644
--- a/build/pkgs/cython/package-version.txt
+++ b/build/pkgs/cython/package-version.txt
@@ -1 +1 @@
-0.29.12.p0
+0.29.16