diff --git a/Makefile b/Makefile
deleted file mode 100644
index 004a6750920..00000000000
--- a/Makefile
+++ /dev/null
@@ -1,388 +0,0 @@
-# Main Makefile for Sage.
-
-# The default target ("all") builds Sage and the whole (HTML) documentation.
-#
-# Target "build" just builds Sage.
-#
-# See below for targets to build the documentation in other formats,
-# to run various types of test suites, and to remove parts of the build etc.
-
-default: all
-
-all: base-toolchain
-	$(MAKE) all-start
-
-build: base-toolchain
-	$(MAKE) all-build
-
-build-local: base-toolchain
-	$(MAKE) all-build-local
-
-build-venv: base-toolchain
-	$(MAKE) all-build-venv
-
-start: base-toolchain
-	$(MAKE) build-start
-
-sageruntime: base-toolchain
-	$(MAKE) all-sageruntime
-
-SAGE_ROOT_LOGS = logs
-
-# The --stop flag below is just a random flag to induce graceful
-# breakage with non-GNU versions of make.
-# See https://trac.sagemath.org/ticket/24617
-
-# Defer unknown targets to build/make/Makefile
-%::
-	@if [ -x relocate-once.py ]; then ./relocate-once.py; fi
-	$(MAKE) build/make/Makefile --stop
-	+build/bin/sage-logger \
-		"cd build/make && ./install '$@'" logs/install.log
-
-# CONFIG_FILES lists all files that appear in AC_CONFIG_FILES in configure.ac;
-# except for build/make/Makefile-auto, which is unused by the build system
-CONFIG_FILES = build/make/Makefile src/bin/sage-env-config build/bin/sage-build-env-config pkgs/sage-conf/_sage_conf/_conf.py
-
-# SPKG_COLLECT_FILES contains all files that influence the SAGE_SPKG_COLLECT macro
-SPKG_COLLECT_FILES = build/pkgs/*/type build/pkgs/*/package-version.txt build/pkgs/*/dependencies build/pkgs/*/requirements.txt build/pkgs/*/checksums.ini build/pkgs/*/spkg-install
-
-# If configure was run before, rerun it with the old arguments.
-# Otherwise, run configure with argument $PREREQ_OPTIONS.
-build/make/Makefile: configure $(SPKG_COLLECT_FILES) $(CONFIG_FILES:%=%.in)
-	rm -f config.log
-	mkdir -p logs/pkgs
-	ln -s logs/pkgs/config.log config.log
-	@if [ -x config.status ]; then \
-		./config.status --recheck && ./config.status; \
-	else \
-		echo >&2 '****************************************************************************'; \
-		echo >&2 'error: Sage source tree is unconfigured. Please run "./configure" first.'; \
-		echo >&2 'note:  Type "./configure --help" to see the available configuration options.'; \
-		echo >&2 '****************************************************************************'; \
-	        exit 1; \
-	fi
-
-# This is used to monitor progress towards Python 3 and prevent
-# regressions. Should be removed after the full switch to python3.
-#
-# As of Sage 9.0: keep the build target for backward compatibility,
-# but it just runs "make".
-buildbot-python3:
-	$(MAKE)
-
-# Preemptively download all source tarballs of normal packages.
-download:
-	export SAGE_ROOT=$$(pwd) && \
-	export PATH=$$SAGE_ROOT/build/bin:$$PATH && \
-	sage-package download :all:
-
-dist: build/make/Makefile
-	./sage --sdist
-
-pypi-sdists: sage_setup
-	./sage --sh build/pkgs/sage_conf/spkg-src
-	./sage --sh build/pkgs/sage_sws2rst/spkg-src
-	./sage --sh build/pkgs/sage_docbuild/spkg-src
-	./sage --sh build/pkgs/sage_setup/spkg-src
-	./sage --sh build/pkgs/sagelib/spkg-src
-	./sage --sh build/pkgs/sagemath_objects/spkg-src
-	./sage --sh build/pkgs/sagemath_categories/spkg-src
-	./sage --sh build/pkgs/sagemath_environment/spkg-src
-	./sage --sh build/pkgs/sagemath_repl/spkg-src
-	@echo "Built sdists are in upstream/"
-
-# Ensuring wheels are present, even for packages that may have been installed
-# as editable. Until we have better uninstallation of script packages, we
-# just remove the timestamps, which will lead to rebuilds of the packages.
-PYPI_WHEEL_PACKAGES = sage_sws2rst sage_setup sagemath_environment sagemath_objects sagemath_repl sagemath_categories
-pypi-wheels:
-	for a in $(PYPI_WHEEL_PACKAGES); do \
-	    rm -f venv/var/lib/sage/installed/$$a-*; \
-	done
-	for a in $(PYPI_WHEEL_PACKAGES); do \
-	    $(MAKE) SAGE_EDITABLE=no $$a; \
-	done
-	@echo "Built wheels are in venv/var/lib/sage/wheels/"
-
-# sage_docbuild is here, not in PYPI_WHEEL_PACKAGES, because it depends on sagelib
-WHEEL_PACKAGES = $(PYPI_WHEEL_PACKAGES) sage_conf sagelib sage_docbuild
-wheels:
-	for a in $(WHEEL_PACKAGES); do \
-	    rm -f venv/var/lib/sage/installed/$$a-*; \
-	done
-	for a in $(WHEEL_PACKAGES); do \
-	    $(MAKE) SAGE_EDITABLE=no $$a; \
-	done
-	@echo "Built wheels are in venv/var/lib/sage/wheels/"
-
-###############################################################################
-# Cleaning up
-###############################################################################
-
-SAGE_ROOT = $(CURDIR)
-SAGE_SRC = $(SAGE_ROOT)/src
-
-clean:
-	@echo "Deleting package build directories..."
-	if [ -f "$(SAGE_SRC)"/bin/sage-env-config ]; then \
-	    . "$(SAGE_SRC)"/bin/sage-env-config; \
-	    if [ -n "$$SAGE_LOCAL" ]; then \
-	        rm -rf "$$SAGE_LOCAL/var/tmp/sage/build"; \
-	    fi; \
-	fi
-
-# "c_lib", ".cython_version", "build" in $(SAGE_SRC) are from old sage versions
-# Cleaning .so files (and .c and .cpp files associated with .pyx files) is for editable installs.
-# Also cython_debug is for editable installs.
-sagelib-clean:
-	@echo "Deleting Sage library build artifacts..."
-	if [ -d "$(SAGE_SRC)" ]; then \
-	    (cd "$(SAGE_SRC)" && \
-	     rm -rf c_lib .cython_version cython_debug; \
-	     rm -rf build; find . -name '*.pyc' -o -name "*.so" | xargs rm -f; \
-	     rm -f $$(find . -name "*.pyx" | sed 's/\(.*\)[.]pyx$$/\1.c \1.cpp/'); \
-	     rm -rf sage/ext/interpreters) \
-	    && (cd "$(SAGE_ROOT)/build/pkgs/sagelib/src/" && rm -rf build); \
-	fi
-
-sage_docbuild-clean:
-	(cd "$(SAGE_ROOT)/build/pkgs/sage_docbuild/src" && rm -rf build)
-
-sage_setup-clean:
-	(cd "$(SAGE_ROOT)/build/pkgs/sage_setup/src" && rm -rf build)
-
-build-clean: clean doc-clean sagelib-clean sage_docbuild-clean
-
-doc-clean:
-	if [ -f "$(SAGE_SRC)"/bin/sage-env-config ]; then \
-	    . "$(SAGE_SRC)"/bin/sage-env-config; \
-	    if [ -n "$$SAGE_LOCAL" ]; then \
-	        rm -rf "$$SAGE_LOCAL/share/doc/sage/inventory"; \
-	        rm -rf "$$SAGE_LOCAL/share/doc/sage/doctrees"; \
-	    fi; \
-	fi; \
-	cd "$(SAGE_SRC)/doc" && $(MAKE) clean
-
-# Deleting src/lib is to get rid of src/lib/pkgconfig
-# that was forgotten to clean in #29082.
-misc-clean:
-	@echo "Deleting build artifacts generated by autoconf, automake, make ..."
-	rm -rf logs
-	rm -rf dist
-	rm -rf tmp
-	rm -f aclocal.m4 config.log confcache
-	rm -rf autom4te.cache
-	rm -f build/make/Makefile build/make/Makefile-auto
-	rm -rf src/lib
-
-bdist-clean: clean
-	$(MAKE) misc-clean
-	@echo "Deleting build artifacts generated by configure ..."
-	rm -f config.status
-
-distclean: build-clean
-	$(MAKE) misc-clean
-	@echo "Deleting all remaining output from build system ..."
-	rm -rf local
-	rm -f src/bin/sage-env-config
-	rm -f prefix venv
-
-# Delete all auto-generated files which are distributed as part of the
-# source tarball
-bootstrap-clean:
-	rm -rf config/install-sh config/compile config/config.guess config/config.sub config/missing configure build/make/Makefile-auto.in
-	rm -f src/doc/en/installation/*.txt
-	rm -rf src/doc/en/reference/spkg/*.rst
-	rm -f environment.yml
-	rm -f src/environment.yml
-	rm -f src/environment-dev.yml
-	rm -f environment-optional.yml
-	rm -f src/environment-optional.yml
-	rm -f src/Pipfile
-	rm -f src/pyproject.toml
-	rm -f src/requirements.txt
-	rm -f src/setup.cfg
-
-# Remove absolutely everything which isn't part of the git repo
-maintainer-clean: distclean bootstrap-clean
-	rm -rf upstream
-
-# Remove everything that is not necessary to run Sage and pass all its
-# doctests.
-micro_release:
-	$(MAKE) sagelib-clean
-	$(MAKE) misc-clean
-	@echo "Stripping binaries ..."
-	LC_ALL=C find local/lib local/bin local/var/lib/sage/venv-python* -type f -exec strip '{}' ';' 2>&1 | grep -v "File format not recognized" |  grep -v "File truncated" || true
-	@echo "Removing sphinx artifacts..."
-	rm -rf local/share/doc/sage/doctrees local/share/doc/sage/inventory
-	@echo "Removing documentation. Inspection in IPython still works."
-	rm -rf local/share/doc local/share/*/doc local/share/*/examples local/share/singular/html
-	@echo "Removing unnecessary files & directories - make will not be functional afterwards anymore"
-	@# We keep src/sage for some doctests that it expect it to be there and
-	@# also because it does not add any weight with rdfind below.
-	@# We need src/bin/ for the scripts that invoke Sage
-	@# We need sage, the script to start Sage
-	@# We need local/, the dependencies and the built Sage library itself.
-	@# We keep VERSION.txt.
-	@# We keep COPYING.txt so we ship a license with this distribution.
-	find . -name . -o -prune ! -name config.status ! -name src ! -name sage ! -name local ! -name VERSION.txt ! -name COPYING.txt ! -name build -exec rm -rf \{\} \;
-	cd src && find . -name . -o -prune ! -name sage ! -name bin -exec rm -rf \{\} \;
-	if command -v rdfind > /dev/null; then \
-		echo "Hardlinking identical files."; \
-		rdfind -makeresultsfile false -makehardlinks true .; \
-	else \
-		echo "rdfind not installed. Not hardlinking identical files."; \
-	fi
-
-# Leaves everything that is needed to make the next "make" fast but removes
-# all the cheap build artifacts that can be quickly regenerated.
-# Trac #30960: We no longer uninstall sagelib.
-fast-rebuild-clean: misc-clean
-	rm -rf upstream/
-	rm -rf build/pkgs/sagelib/src/build/temp.*
-	# The .py files in src/build are restored from src/sage without their
-	# mtimes changed.
-	-find build/pkgs/sagelib/src/build -name '*.py' -exec rm \{\} \;
-	# Remove leftovers from ancient branches
-	rm -rf src/build
-
-###############################################################################
-# Testing
-###############################################################################
-
-TEST_LOG = $(SAGE_ROOT_LOGS)/test.log
-
-TEST_FILES = --all
-
-TEST_FLAGS =
-
-# When the documentation is installed, "optional" also includes all tests marked 'sagemath_doc_html',
-# see https://trac.sagemath.org/ticket/25345, https://trac.sagemath.org/ticket/26110, and
-# https://trac.sagemath.org/ticket/32759
-TEST_OPTIONAL = sage,optional
-
-# Keep track of the top-level *test* Makefile target for logging.
-TEST_TARGET = $@
-
-TEST = ./sage -t --logfile=$(TEST_LOG) $(TEST_FLAGS) --optional=$(TEST_OPTIONAL) $(TEST_FILES)
-
-test: all
-	@echo '### make $(TEST_TARGET): Running $(TEST)' >> $(TEST_LOG)
-	$(TEST)
-
-check:
-	@$(MAKE) test
-
-testall:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" test
-
-testlong:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" test
-
-testalllong:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" testall
-
-ptest:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) -p" test
-
-ptestall:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" ptest
-
-ptestlong:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptest
-
-ptestalllong:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptestall
-
-testoptional:
-	@echo "'make $@' is deprecated; use 'make test'"
-	@$(MAKE) test
-
-testoptionallong:
-	@echo "'make $@' is deprecated; use 'make testlong'"
-	@$(MAKE) testlong
-
-ptestoptional:
-	@echo "'make $@' is deprecated; use 'make ptest'"
-	@$(MAKE) ptest
-
-ptestoptionallong:
-	@echo "'make $@' is deprecated; use 'make ptestlong'"
-	@$(MAKE) ptestlong
-
-# *test*-nodoc targets skip the docbuild and skip all tests that depend on the documentation
-
-test-nodoc: TEST_OPTIONAL := $(TEST_OPTIONAL),!sagemath_doc_html,!sagemath_doc_pdf
-test-nodoc: build
-	@echo '### make $(TEST_TARGET): Running $(TEST)' >> $(TEST_LOG)
-	$(TEST)
-
-check-nodoc:
-	@$(MAKE) test-nodoc
-
-testall-nodoc:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" test-nodoc
-
-testlong-nodoc:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" test-nodoc
-
-testalllong-nodoc:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" testall-nodoc
-
-ptest-nodoc:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) -p" test-nodoc
-
-ptestall-nodoc:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" ptest-nodoc
-
-ptestlong-nodoc:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptest-nodoc
-
-ptestalllong-nodoc:
-	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptestall-nodoc
-
-testoptional-nodoc:
-	@echo "'make $@' is deprecated; use 'make test-nodoc'"
-	@$(MAKE) test-nodoc
-
-testoptionallong-nodoc:
-	@echo "'make $@' is deprecated; use 'make testlong-nodoc'"
-	@$(MAKE) testlong-nodoc
-
-ptestoptional-nodoc:
-	@echo "'make $@' is deprecated; use 'make ptest-nodoc'"
-	@$(MAKE) ptest-nodoc
-
-ptestoptionallong-nodoc:
-	@echo "'make $@' is deprecated; use 'make ptestlong-nodoc'"
-	@$(MAKE) ptestlong-nodoc
-
-###############################################################################
-
-configure: bootstrap src/doc/bootstrap configure.ac src/bin/sage-version.sh m4/*.m4 build/pkgs/*/spkg-configure.m4 build/pkgs/*/type build/pkgs/*/install-requires.txt build/pkgs/*/package-version.txt build/pkgs/*/distros/*.txt
-	./bootstrap -d
-
-install: all
-	@echo "******************************************************************"
-	@echo "The '$@' target is a no-op; 'make' already does 'make install'"
-	@echo "You can change the install prefix from its default"
-	@echo "(the subdirectory 'local') by using ./configure --prefix=PREFIX"
-	@echo "You can also consider using the binary packaging scripts"
-	@echo "from https://github.com/sagemath/binary-pkg"
-	@echo "******************************************************************"
-
-# Setting SAGE_PKGCONFIG is only so that make does not exit with
-# "This Makefile needs to be invoked by build/make/install".
-list:
-	@$(MAKE) --silent build/make/Makefile >&2
-	@$(MAKE) --silent -f build/make/Makefile SAGE_PKGCONFIG=dummy $@
-
-.PHONY: default build dist install micro_release \
-	pypi-sdists pypi-wheels wheels \
-	misc-clean bdist-clean distclean bootstrap-clean maintainer-clean \
-	test check testoptional testall testlong testoptionallong testallong \
-	ptest ptestoptional ptestall ptestlong ptestoptionallong ptestallong \
-	buildbot-python3 list \
-	doc-clean clean sagelib-clean build-clean
diff --git a/Makefile b/Makefile
new file mode 120000
index 00000000000..1092afcadb5
--- /dev/null
+++ b/Makefile
@@ -0,0 +1 @@
+pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/Makefile
\ No newline at end of file
diff --git a/build b/build
new file mode 120000
index 00000000000..bb3862995d4
--- /dev/null
+++ b/build
@@ -0,0 +1 @@
+pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build
\ No newline at end of file
diff --git a/build/pkgs b/build/pkgs
deleted file mode 120000
index 668c5bd6b79..00000000000
--- a/build/pkgs
+++ /dev/null
@@ -1 +0,0 @@
-../pkgs/sage-bootstrap/sage_bootstrap/pkgs
\ No newline at end of file
diff --git a/config b/config
new file mode 120000
index 00000000000..341e2569504
--- /dev/null
+++ b/config
@@ -0,0 +1 @@
+pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/config
\ No newline at end of file
diff --git a/configure.ac b/configure.ac
deleted file mode 100644
index 4ab080c6115..00000000000
--- a/configure.ac
+++ /dev/null
@@ -1,575 +0,0 @@
-#*****************************************************************************
-#       Copyright (C) 2005-2007 William Stein
-#       Copyright (C) 2009-2011 David Kirkby
-#       Copyright (C) 2012-2016 Jeroen Demeyer
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 2 of the License, or
-# (at your option) any later version.
-#                  http://www.gnu.org/licenses/
-#*****************************************************************************
-
-dnl If you are going to update this, please stick the recommended layout
-dnl in the autoconf manual - i.e.
-
-dnl First check for programs
-dnl Next check for libraries
-dnl Next check for header files
-dnl Next check for types
-dnl Next check for structures
-dnl Next check compiler characteristics
-dnl Next check for library functions
-dnl Next check for system services
-
-dnl Older versions do not support $GFC
-AC_PREREQ([2.69])
-
-AC_DEFUN([SAGE_VERSION], m4_esyscmd_s([. src/bin/sage-version.sh && echo $SAGE_VERSION]))
-AC_INIT([Sage], SAGE_VERSION, [sage-devel@googlegroups.com])
-
-
-AC_COPYRIGHT([GPL version 3])
-AC_CONFIG_SRCDIR([configure.ac])
-AC_CONFIG_AUX_DIR([config])
-
-dnl This is the hierarchy where everything gets installed (SAGE_LOCAL).
-dnl By default, it is the subdirectory local, but the user
-dnl can override it by supplying --prefix=....
-AC_PREFIX_DEFAULT(`pwd -P`/local)
-
-dnl We don't really use automake, but configure needs aclocal and the
-dnl automake library files (like config.guess).
-AM_INIT_AUTOMAKE([1.9.6 foreign])
-
-# Allow "configure --disable-maintainer-mode" to disable timestamp checking
-AM_MAINTAINER_MODE([enable])
-
-dnl Make sure the path to our own m4 macros is always properly set
-dnl and doesn't depend on how autoconf is called.
-AC_CONFIG_MACRO_DIR([m4])
-
-dnl The AC_LIB_RPATH macro comes from gettext, which is one of our bootstrap
-dnl packages. It defines, among other things, the $acl_shlibext variable that
-dnl contains the shared library extension for this system. We already use the
-dnl AM_ICONV macro from gettext (which ultimately calls AC_LIB_RPATH), and we
-dnl avoid involving libtool by using it to get the shared library extension.
-AC_LIB_RPATH
-AC_SUBST(SHLIBEXT, "${acl_shlibext}")
-
-#---------------------------------------------------------
-#
-# This is essentially the configure part of the old "install" file.
-# Over time, this should be changed to proper autoconf style with
-# configure options.
-#
-
-########################################################################
-# Set various environment variables (needed at configure time)
-########################################################################
-
-# Assume current directory is SAGE_ROOT.
-SAGE_ROOT=`pwd -P`
-AC_SUBST(SAGE_ROOT)
-
-SAGE_LOCAL="$prefix"
-# The following line is necessary because the code below
-# inspects stuff in the installation prefix at configure time.
-# This is nonstandard.
-if test "$SAGE_LOCAL" = NONE; then
-    SAGE_LOCAL=local
-    if test -x "$SAGE_LOCAL"/bin/python3; then
-        # Incremental build with an existing installation of python3 spkg
-        # in SAGE_LOCAL or venv in SAGE_LOCAL.  Keep old behavior.
-        SAGE_VENV_AUTO=no
-    else
-        SAGE_VENV_AUTO=yes
-    fi
-else
-    SAGE_VENV_AUTO=no
-fi
-SAGE_SRC="$SAGE_ROOT/src"
-
-AC_ARG_WITH([sage-venv],
-            [AS_HELP_STRING([--with-sage-venv={auto (default),yes,no,SAGE_VENV}],
-                            [put Python packages into an installation hierarchy separate from prefix])],
-            [SAGE_VENV="$withval"],
-            [SAGE_VENV="auto"])
-AC_SUBST([SAGE_VENV])
-
-AC_SUBST([SAGE_DOCS], ['${SAGE_LOCAL}'])dnl Quoted so that it is resolved at build time by shell/Makefile
-
-#---------------------------------------------------------
-
-AC_ARG_ENABLE([build-as-root],
-              [AS_HELP_STRING([--enable-build-as-root],
-                              [allow building Sage as root (for use in containers)])],
-              [enable_build_as_root=$enableval],
-              [enable_build_as_root=no])
-if test "$enable_build_as_root" != yes; then
-   AX_CHECK_ROOT([AC_MSG_ERROR([You cannot build Sage as root, switch to an unprivileged user.  (If building in a container, use --enable-build-as-root.)])], [])
-fi
-
-AC_ARG_ENABLE([fat-binary],
-              [AS_HELP_STRING([--enable-fat-binary],
-                              [build binaries that will run on the widest range of target CPUs (but not relocatable)])],
-              [AC_SUBST(SAGE_FAT_BINARY, "yes")],
-              [])
-
-AC_ARG_VAR(SAGE_FAT_BINARY, set to "yes" to build binaries that will run on the widest range of target CPUs (but not relocatable))
-
-AC_ARG_ENABLE([debug],
-              [AS_HELP_STRING([--enable-debug={no|symbols|yes}],
-                              [controls debugging support: "no" debugging; debugging "symbols" (default); build debug version ("yes")])],
-              [AC_SUBST(SAGE_DEBUG, $enableval)],
-              [])
-
-AC_ARG_VAR(SAGE_DEBUG, controls debugging support: "no" debugging; debugging "symbols" (default); build debug version ("yes"))
-
-AC_ARG_ENABLE([editable],
-              [AS_HELP_STRING([--disable-editable],
-                              [do not use an editable install of the Sage library: changes to Python files will require "sage -b" to rebuild the Sage library])],
-              [AC_SUBST([SAGE_EDITABLE], [$enableval])],
-              [AC_SUBST([SAGE_EDITABLE], [yes])])
-
-# Check whether we are on a supported platform
-AC_CANONICAL_BUILD()
-AC_CANONICAL_HOST()
-
-case $host in
-*-*-sunos*|*-*-solaris2.[1-9])
-AC_MSG_ERROR([[
-Sage is not supported on any version of Solaris earlier than 10.
-Sage has been tested on the first release of Solaris 10
-(03/2005) and works on that. Sage may or may not work with
-your version of Solaris.
-
-More information can be found about Sage on Solaris
-on the Wiki at http://wiki.sagemath.org/solaris]]);;
-
-*-*-darwin[1-7].*)
-AC_MSG_ERROR([[
-Sage has never been built on OS X 10.3 (Panther)
-or earlier. The oldest version of OS X successfully used
-is OS X version 10.4 (Tiger). You might consider updating
-your version of OS X if your hardware permits this, but
-Apple charges for upgrades of OS X]]);;
-
-*-*-hpux*)
-AC_MSG_ERROR([[
-You are attempting to build Sage on HP's HP-UX operating system,
-which is not a supported platform for Sage yet though
-some work has been done on HP-UX. A port does not look to
-be particularly difficult. Some information can be
-found on the Sage Wiki at http://wiki.sagemath.org/HP-UX
-
-If you would like to help port Sage to HP-UX,
-please join the sage-devel discussion list - see
-http://groups.google.com/group/sage-devel
-The Sage community would also appreciate any patches you submit]]);;
-
-*-*-aix*)
-AC_MSG_ERROR([[
-You are attempting to build Sage on IBM's AIX operating system,
-which is not a supported platform for Sage yet. Things may or
-may not work. If you would like to help port Sage to AIX,
-please join the sage-devel discussion list - see
-http://groups.google.com/group/sage-devel
-The Sage community would also appreciate any patches you submit]]);;
-
-*-*-irix*)
-AC_MSG_ERROR([[
-You are attempting to build Sage on SGI's IRIX operating system,
-which is not a supported platform for Sage yet. Things may or
-may not work. If you would like to help port Sage to IRIX,
-please join the sage-devel discussion list - see
-http://groups.google.com/group/sage-devel
-The Sage community would also appreciate any patches you submit]]);;
-
-*-*-osf*)
-AC_MSG_ERROR([[
-You are attempting to build Sage on HP's Tru64 operating system,
-which is not a supported platform for Sage yet. Things may or
-may not work. If you would like to help port Sage to Tru64,
-please join the sage-devel discussion list - see
-http://groups.google.com/group/sage-devel
-The Sage community would also appreciate any patches you submit]]);;
-
-# The following are all supported platforms.
-*-*-freebsd*);;
-*-*-linux*);;
-*-*-darwin*);;
-*-*-solaris*);;
-*-*-cygwin*);;
-
-# Wildcard for other unsupported platforms
-*)
-AC_MSG_ERROR([[
-You are attempting to build Sage on $host,
-which is not a supported platform for Sage yet. Things may or
-may not work. If you would like to help port Sage to $host,
-please join the sage-devel discussion list - see
-http://groups.google.com/group/sage-devel
-The Sage community would also appreciate any patches you submit]]);;
-esac
-
-
-###############################################################################
-# Check general programs
-###############################################################################
-
-AC_PROG_SED
-
-AC_CHECK_PROG(found_ar, ar, yes, no)
-if test x$found_ar != xyes
-then
-    AC_MSG_NOTICE([Sorry, the 'ar' command must be in the path to build AC_PACKAGE_NAME])
-    AC_MSG_NOTICE([On some systems it can be found in /usr/ccs/bin ])
-    AC_MSG_NOTICE(['ar' is also part of the GNU 'binutils' package.])
-    AC_MSG_ERROR([Exiting, as the archiver 'ar' can not be found.])
-fi
-
-AC_CHECK_PROG(found_m4, m4, yes, no)
-if test x$found_m4 != xyes
-then
-    AC_MSG_NOTICE([Sorry, the 'm4' command must be in the path to build AC_PACKAGE_NAME])
-    AC_MSG_NOTICE([On some systems it can be found in /usr/ccs/bin])
-    AC_MSG_NOTICE([See also http://www.gnu.org/software/m4/])
-    AC_MSG_ERROR([Exiting, as the macro processor 'm4' can not be found.])
-fi
-
-m4_ifndef([PKG_PROG_PKG_CONFIG], [m4_errprint(
-[Error: could not locate the pkg-config autoconf macros. These are
-usually located in /usr/share/aclocal/pkg.m4. If your macros are
-in a different location, try setting the environment variable
-ACLOCAL="aclocal -I/other/macro/dir" before running ./bootstrap
-])
-dnl Exit autoconf with exit code 16 in this case. This will be
-dnl caught by the bootstrap script.
-m4_exit(16)])
-
-PKG_PROG_PKG_CONFIG([0.29])
-
-AC_CHECK_PROG(found_ranlib, ranlib, yes, no)
-if test x$found_ranlib != xyes
-then
-    AC_MSG_NOTICE([Sorry, the 'ranlib' command must be in the path to build AC_PACKAGE_NAME])
-    AC_MSG_NOTICE([On some systems it can be found in /usr/ccs/bin ])
-    AC_MSG_NOTICE(['ranlib' is also part of the GNU 'binutils' package.])
-    AC_MSG_ERROR([Exiting, as 'ranlib' can not be found.])
-fi
-
-AC_CHECK_PROG(found_strip, strip, yes, no)
-if test x$found_strip != xyes
-then
-    AC_MSG_NOTICE([Sorry, the 'strip' command must be in the path to build AC_PACKAGE_NAME])
-    AC_MSG_NOTICE([On some systems 'strip' can be found in /usr/ccs/bin ])
-    AC_MSG_NOTICE(['strip' is also part of the GNU 'binutils' package.])
-    AC_MSG_ERROR([Exiting, as 'strip' can not be found.])
-fi
-
-# Check tar
-AC_CACHE_CHECK([for GNU or BSD tar], [ac_cv_path_TAR], [
-AC_PATH_PROGS_FEATURE_CHECK(TAR, [tar gtar], [[
-ac_version_TAR=`$ac_path_TAR --version 2>&1`
-if echo "$ac_version_TAR" | grep >/dev/null GNU; then
-    ac_cv_path_TAR=$ac_path_TAR
-    if test $ac_prog = tar; then
-        ac_path_TAR_found=:
-    fi
-fi
-if echo "$ac_version_TAR" | grep >/dev/null bsdtar; then
-    ac_cv_path_TAR=$ac_path_TAR
-    if test $ac_prog = tar; then
-        ac_path_TAR_found=:
-    fi
-fi
-]],
-[AC_MSG_ERROR([could not find either a GNU or BSD version of tar])],
-[$PATH:/usr/sfw/bin])
-])
-
-command_TAR=`command -v tar 2>/dev/null`
-AS_IF([test x$command_TAR != x$ac_cv_path_TAR],
-      [AC_MSG_ERROR([[found a good version of tar in $ac_cv_path_TAR, but it's not the first "tar" program in your PATH]])]
-)
-
-# Check make (unless MAKE is set)
-if test -z "$MAKE"; then
-    AC_CACHE_CHECK([for GNU make], [ac_cv_path_MAKE], [
-    AC_PATH_PROGS_FEATURE_CHECK(MAKE, [make gmake], [[
-    ac_version_MAKE=`$ac_path_MAKE --version 2>&1`
-    if echo "$ac_version_MAKE" | grep >/dev/null GNU; then
-        ac_cv_path_MAKE=$ac_path_MAKE
-        if test $ac_prog = make; then
-            ac_path_MAKE_found=:
-        fi
-    fi
-    ]],
-    [AC_MSG_ERROR([could not find a GNU version of make])],
-    [$PATH:/usr/sfw/bin])
-    ])
-
-    command_MAKE=`command -v make 2>/dev/null`
-    AS_IF([test x$command_MAKE != x$ac_cv_path_MAKE],
-          [AC_MSG_ERROR([[found GNU make in $ac_cv_path_MAKE, but it's not the first "make" program in your PATH]])])
-fi
-
-# Check for system python
-AC_MSG_CHECKING([for Python])
-if SAGE_BOOTSTRAP_PYTHON=$(build/bin/sage-bootstrap-python -c "import sys; print(sys.executable)"); then
-    AC_MSG_RESULT([$SAGE_BOOTSTRAP_PYTHON])
-else
-    AC_MSG_ERROR([You do not have a suitable version of Python installed])
-fi
-
-# Check for Latex, the use of which is less important in Sage than
-# it used to be, as it was at one time required to build any documentation
-# but this is no longer so.
-AC_CHECK_PROG(found_latex, latex, yes, no)
-if test x$found_latex != xyes
-then
-    AC_MSG_NOTICE([You do not have 'latex', which is recommended, but not])
-    AC_MSG_NOTICE([required. Latex is only really used for building pdf])
-    AC_MSG_NOTICE([documents and for %latex mode in the AC_PACKAGE_NAME notebook.])
-fi
-
-# Check that perl is available, with version 5.8.0 or later.
-# Some packages need perl, however it is not clear whether Sage really
-# requires version >= 5.8.0.  The R package *used* to require it, but
-# not anymore. -- Jeroen Demeyer
-AC_PATH_PROG([PERL],[perl])
-AX_PROG_PERL_VERSION([5.8.0],[],[
-    AC_MSG_ERROR([Exiting, since AC_PACKAGE_NAME requires perl-5.8.0 or later])
-])
-
-###############################################################################
-# Check C/C++/Fortran compilers
-###############################################################################
-
-# Save compiler flags as configured by the user.
-# We have to redo this, because otherwise `AC_PROG_CC` will just overwrite them.
-AC_SUBST(CFLAGS, "$CFLAGS")
-AC_SUBST(CXXFLAGS, "$CXXFLAGS")
-AC_SUBST(FCFLAGS, "$FCFLAGS")
-AC_SUBST(F77FLAGS, "$F77FLAGS")
-AC_ARG_VAR(CFLAGS, C compiler flags)
-AC_ARG_VAR(CXXFLAGS, C compiler flags)
-AC_ARG_VAR(FCFLAGS, Fortran compiler flags)
-AC_ARG_VAR(F77CFLAGS, Fortran 77 compiler flags)
-
-SAGE_CHECK_CONDA_COMPILERS
-
-AC_PROG_CC()
-AC_PROG_CPP()
-AC_PROG_CXX()
-AC_PROG_FC()
-
-AC_SUBST(CC)
-AC_SUBST(FC)
-
-# On darwin, also set the objective C/C++ compilers
-# Checking on all platforms doesn't hurt and stops
-# configure from sending an error when run on non-darwin.
-AC_PROG_OBJC()
-AC_PROG_OBJCXX()
-AC_SUBST(OBJC)
-AC_SUBST(OBJCXX)
-
-AS_IF([test "x$CXX" = x], [AC_MSG_ERROR([a C++ compiler is missing])])
-
-
-###############################################################################
-# Check header files
-###############################################################################
-
-
-# complex.h is one that might not exist on older systems.
-AC_LANG(C++)
-AC_CHECK_HEADER([complex.h],[],[
-    AC_MSG_ERROR([Exiting, since you do not have the 'complex.h' header file.])
-])
-
-
-###############################################################################
-# Check libraries
-###############################################################################
-
-# First check for something that should be in any maths library (sqrt).
-AC_LANG(C++)
-AC_CHECK_LIB(m,sqrt,[],[
-                       AC_MSG_NOTICE([This system has no maths library installed.])
-                       # On AIX this is not installed by default - strange as that might seem.
-                       # but is in a fileset bos.adt.libm. However, the fileset bos.adt
-                       # includes other things that are probably useful.
-                       if test "x`uname`" = 'xAIX'
-                       then
-                          AC_MSG_NOTICE([On AIX, libm is contained in the bos.adt.libm fileset.])
-                          AC_MSG_NOTICE([Actually, we recommend to install the complete bos.adt fileset.])
-                          AC_MSG_NOTICE([This needs to be performed by a system administrator.])
-                       fi
-                       AC_MSG_ERROR([Exiting, since a maths library was not found.])
-                       ])
-
-# Check for system services
-
-# Check that we are not building in a directory containing spaces
-AS_IF([echo "$ac_pwd" |grep " " >/dev/null],
-      AC_MSG_ERROR([the path to the Sage root directory ($ac_pwd) contains a space. Sage will not build correctly in this case])
-)
-
-SAGE_CHECK_OSX_SUPPORTED()
-
-###############################################################################
-# Collect substitutions for build/make/Makefile.in
-###############################################################################
-
-# $(TOOLCHAIN) variable containing prerequisites for the build
-SAGE_TOOLCHAIN=gcc
-if test "$SAGE_INSTALL_CCACHE" = yes ; then
-    SAGE_TOOLCHAIN="$SAGE_TOOLCHAIN ccache"
-fi
-AC_SUBST([SAGE_TOOLCHAIN])
-
-AC_ARG_ENABLE([experimental-packages],
-  [AS_HELP_STRING([--enable-experimental-packages],
-    [allow installing experimental packages (default: no = ask for user confirmation for each package)])])
-AC_ARG_ENABLE([download-from-upstream-url],
-  [AS_HELP_STRING([--enable-download-from-upstream-url],
-    [allow downloading packages from their upstream URL if they cannot be found on the Sage mirrors])])
-
-SAGE_SPKG_OPTIONS=""
-AS_IF([test "x$enable_experimental_packages" = "xyes"], [
-  AS_VAR_APPEND([SAGE_SPKG_OPTIONS], [" -y"])
-])
-AS_IF([test "x$enable_download_from_upstream_url" = "xyes"], [
-  AS_VAR_APPEND([SAGE_SPKG_OPTIONS], [" -o"])
-])
-AC_SUBST([SAGE_SPKG_OPTIONS])
-
-AC_ARG_ENABLE([sagelib],
-  AS_HELP_STRING([--disable-sage_conf],
-                 [disable build of the sage_conf package]), [
-    for pkg in sage_conf; do
-      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
-    done
-  ])
-
-AC_ARG_ENABLE([cvxopt],
-  AS_HELP_STRING([--disable-cvxopt],
-                 [disable build of the cvxopt package and its prerequisite suitesparse]), [
-    for pkg in cvxopt suitesparse; do
-      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
-    done
-  ])
-
-AC_ARG_ENABLE([notebook],
-  AS_HELP_STRING([--disable-notebook],
-                 [disable build of the Jupyter notebook and related packages]), [
-    for pkg in notebook nbconvert beautifulsoup4 sagenb_export nbformat nbclient terminado send2trash prometheus_client mistune pandocfilters bleach defusedxml jsonschema jupyter_jsmol argon2_cffi; do
-      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
-    done
-  ])
-
-AS_IF([test "$SAGE_ENABLE_notebook" = no -a "$SAGE_ENABLE_sagelib" = no], [
-    for pkg in jupyter_client ipykernel ipython zeromq pyzmq; do
-      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
-    done
-  ])
-
-AC_ARG_ENABLE([r],
-  AS_HELP_STRING([--disable-r],
-                 [disable build of the R package and related packages]), [
-    for pkg in r rpy2 r_jupyter pcre; do
-      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
-    done
-  ])
-
-AC_ARG_ENABLE([doc],
-  AS_HELP_STRING([--disable-doc],
-                 [disable build of the Sage documentation and packages depending on it]), [
-    dnl Disable packages needed for docbuilding
-    for pkg in sage_docbuild alabaster babel snowballstemmer imagesize sphinx sphinxcontrib_devhelp sphinxcontrib_jsmath sphinxcontrib_serializinghtml sphinxcontrib_applehelp sphinxcontrib_htmlhelp sphinxcontrib_qthelp sphinxcontrib_websupport jupyter_sphinx; do
-      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
-    done
-    AS_VAR_IF([enableval], [no], [dnl Disable the docbuild by disabling the install tree for documentation
-        AS_VAR_SET([SAGE_DOCS], [])dnl
-    ])
-  ])
-
-AC_ARG_ENABLE([sagelib],
-  AS_HELP_STRING([--disable-sagelib],
-                 [disable build of the Sage library and packages depending on it]), [
-    for pkg in sagelib sage_docbuild sage_setup; do
-      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
-    done
-  ])
-
-dnl Packages that require a special override to use the SPKG
-dnl when the system package is not usable.
-AS_VAR_SET([sage_use_system_gcc], [force])
-
-SAGE_SPKG_COLLECT()
-
-dnl AC_CONFIG_HEADERS([config.h])
-AC_CONFIG_FILES([build/make/Makefile-auto build/make/Makefile])
-AC_CONFIG_FILES([src/bin/sage-env-config src/bin/sage-src-env-config build/bin/sage-build-env-config])
-
-AC_CONFIG_FILES([pkgs/sage-conf/_sage_conf/_conf.py])
-
-dnl Create basic directories needed for Sage
-AC_CONFIG_COMMANDS(mkdirs,
-    [
-        for d in "$SAGE_LOGS" "$SAGE_LOCAL" \
-            "$SAGE_LOCAL/bin" "$SAGE_LOCAL/etc" \
-            "$SAGE_LOCAL/include" "$SAGE_LOCAL/lib" \
-            "$SAGE_LOCAL/lib/pkgconfig" \
-            "$SAGE_SHARE" "$SAGE_LOCAL/var/lib/sage/installed"; do
-                AC_MSG_NOTICE([creating directory $d])
-                mkdir -p "$d" || AC_MSG_ERROR(could not create $d)
-        done
-
-        if test -d "$SAGE_LOCAL/lib64"; then
-            if test ! -L "$SAGE_LOCAL/lib64"; then
-                AC_MSG_NOTICE([[$SAGE_LOCAL/lib64 is not a symlink, see Trac #19782]])
-                AC_MSG_ERROR([[Cannot perform incremental update, run "make distclean && make"]])
-            fi
-        else
-            AC_MSG_NOTICE([[creating symbolic link lib64 -> lib]])
-            ln -s lib "$SAGE_LOCAL/lib64"
-        fi
-    ],
-    [
-        SAGE_LOGS="$SAGE_ROOT/logs/pkgs"
-        SAGE_LOCAL="$SAGE_LOCAL"
-        SAGE_SHARE="$SAGE_LOCAL/share"
-    ])
-
-AC_CONFIG_COMMANDS(links, [
-    dnl Create links for the convenience of users
-    SYMLINK="${ac_top_build_prefix}prefix"
-    AS_IF([test -L "$SYMLINK" -o ! -e "$SYMLINK"], [
-        AC_MSG_NOTICE([creating convenience symlink $SYMLINK -> $SAGE_LOCAL])
-        rm -f "$SYMLINK"
-        ln -sf "$SAGE_LOCAL" "$SYMLINK"
-    ], [
-        AC_MSG_NOTICE([cannot create convenience symlink $SYMLINK -> $SAGE_LOCAL because the file exists and is not a symlink; this is harmless])
-    ])
-    SYMLINK="${ac_top_build_prefix}venv"
-    AS_IF([test -L "$SYMLINK" -o ! -e "$SYMLINK"], [
-        AC_MSG_NOTICE([creating convenience symlink $SYMLINK -> $SAGE_VENV])
-        rm -f "$SYMLINK"
-        ln -sf "$SAGE_VENV" "$SYMLINK"
-    ], [
-        AC_MSG_NOTICE([cannot create convenience symlink $SYMLINK -> $SAGE_VENV because the file exists and is not a symlink; this is harmless])
-    ])
-], [
-    SAGE_LOCAL="$SAGE_LOCAL"
-    eval SAGE_VENV="$SAGE_VENV"dnl eval so as to evaluate the embedded ${SAGE_LOCAL}
-])
-
-AC_OUTPUT()
-
-SAGE_SYSTEM_PACKAGE_NOTICE()
-
-dnl vim:syntax=m4
diff --git a/configure.ac b/configure.ac
new file mode 120000
index 00000000000..c5c9701e3ed
--- /dev/null
+++ b/configure.ac
@@ -0,0 +1 @@
+pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/configure.ac
\ No newline at end of file
diff --git a/m4 b/m4
new file mode 120000
index 00000000000..0399793d26d
--- /dev/null
+++ b/m4
@@ -0,0 +1 @@
+pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4
\ No newline at end of file
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/Makefile b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/Makefile
new file mode 100644
index 00000000000..004a6750920
--- /dev/null
+++ b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/Makefile
@@ -0,0 +1,388 @@
+# Main Makefile for Sage.
+
+# The default target ("all") builds Sage and the whole (HTML) documentation.
+#
+# Target "build" just builds Sage.
+#
+# See below for targets to build the documentation in other formats,
+# to run various types of test suites, and to remove parts of the build etc.
+
+default: all
+
+all: base-toolchain
+	$(MAKE) all-start
+
+build: base-toolchain
+	$(MAKE) all-build
+
+build-local: base-toolchain
+	$(MAKE) all-build-local
+
+build-venv: base-toolchain
+	$(MAKE) all-build-venv
+
+start: base-toolchain
+	$(MAKE) build-start
+
+sageruntime: base-toolchain
+	$(MAKE) all-sageruntime
+
+SAGE_ROOT_LOGS = logs
+
+# The --stop flag below is just a random flag to induce graceful
+# breakage with non-GNU versions of make.
+# See https://trac.sagemath.org/ticket/24617
+
+# Defer unknown targets to build/make/Makefile
+%::
+	@if [ -x relocate-once.py ]; then ./relocate-once.py; fi
+	$(MAKE) build/make/Makefile --stop
+	+build/bin/sage-logger \
+		"cd build/make && ./install '$@'" logs/install.log
+
+# CONFIG_FILES lists all files that appear in AC_CONFIG_FILES in configure.ac;
+# except for build/make/Makefile-auto, which is unused by the build system
+CONFIG_FILES = build/make/Makefile src/bin/sage-env-config build/bin/sage-build-env-config pkgs/sage-conf/_sage_conf/_conf.py
+
+# SPKG_COLLECT_FILES contains all files that influence the SAGE_SPKG_COLLECT macro
+SPKG_COLLECT_FILES = build/pkgs/*/type build/pkgs/*/package-version.txt build/pkgs/*/dependencies build/pkgs/*/requirements.txt build/pkgs/*/checksums.ini build/pkgs/*/spkg-install
+
+# If configure was run before, rerun it with the old arguments.
+# Otherwise, run configure with argument $PREREQ_OPTIONS.
+build/make/Makefile: configure $(SPKG_COLLECT_FILES) $(CONFIG_FILES:%=%.in)
+	rm -f config.log
+	mkdir -p logs/pkgs
+	ln -s logs/pkgs/config.log config.log
+	@if [ -x config.status ]; then \
+		./config.status --recheck && ./config.status; \
+	else \
+		echo >&2 '****************************************************************************'; \
+		echo >&2 'error: Sage source tree is unconfigured. Please run "./configure" first.'; \
+		echo >&2 'note:  Type "./configure --help" to see the available configuration options.'; \
+		echo >&2 '****************************************************************************'; \
+	        exit 1; \
+	fi
+
+# This is used to monitor progress towards Python 3 and prevent
+# regressions. Should be removed after the full switch to python3.
+#
+# As of Sage 9.0: keep the build target for backward compatibility,
+# but it just runs "make".
+buildbot-python3:
+	$(MAKE)
+
+# Preemptively download all source tarballs of normal packages.
+download:
+	export SAGE_ROOT=$$(pwd) && \
+	export PATH=$$SAGE_ROOT/build/bin:$$PATH && \
+	sage-package download :all:
+
+dist: build/make/Makefile
+	./sage --sdist
+
+pypi-sdists: sage_setup
+	./sage --sh build/pkgs/sage_conf/spkg-src
+	./sage --sh build/pkgs/sage_sws2rst/spkg-src
+	./sage --sh build/pkgs/sage_docbuild/spkg-src
+	./sage --sh build/pkgs/sage_setup/spkg-src
+	./sage --sh build/pkgs/sagelib/spkg-src
+	./sage --sh build/pkgs/sagemath_objects/spkg-src
+	./sage --sh build/pkgs/sagemath_categories/spkg-src
+	./sage --sh build/pkgs/sagemath_environment/spkg-src
+	./sage --sh build/pkgs/sagemath_repl/spkg-src
+	@echo "Built sdists are in upstream/"
+
+# Ensuring wheels are present, even for packages that may have been installed
+# as editable. Until we have better uninstallation of script packages, we
+# just remove the timestamps, which will lead to rebuilds of the packages.
+PYPI_WHEEL_PACKAGES = sage_sws2rst sage_setup sagemath_environment sagemath_objects sagemath_repl sagemath_categories
+pypi-wheels:
+	for a in $(PYPI_WHEEL_PACKAGES); do \
+	    rm -f venv/var/lib/sage/installed/$$a-*; \
+	done
+	for a in $(PYPI_WHEEL_PACKAGES); do \
+	    $(MAKE) SAGE_EDITABLE=no $$a; \
+	done
+	@echo "Built wheels are in venv/var/lib/sage/wheels/"
+
+# sage_docbuild is here, not in PYPI_WHEEL_PACKAGES, because it depends on sagelib
+WHEEL_PACKAGES = $(PYPI_WHEEL_PACKAGES) sage_conf sagelib sage_docbuild
+wheels:
+	for a in $(WHEEL_PACKAGES); do \
+	    rm -f venv/var/lib/sage/installed/$$a-*; \
+	done
+	for a in $(WHEEL_PACKAGES); do \
+	    $(MAKE) SAGE_EDITABLE=no $$a; \
+	done
+	@echo "Built wheels are in venv/var/lib/sage/wheels/"
+
+###############################################################################
+# Cleaning up
+###############################################################################
+
+SAGE_ROOT = $(CURDIR)
+SAGE_SRC = $(SAGE_ROOT)/src
+
+clean:
+	@echo "Deleting package build directories..."
+	if [ -f "$(SAGE_SRC)"/bin/sage-env-config ]; then \
+	    . "$(SAGE_SRC)"/bin/sage-env-config; \
+	    if [ -n "$$SAGE_LOCAL" ]; then \
+	        rm -rf "$$SAGE_LOCAL/var/tmp/sage/build"; \
+	    fi; \
+	fi
+
+# "c_lib", ".cython_version", "build" in $(SAGE_SRC) are from old sage versions
+# Cleaning .so files (and .c and .cpp files associated with .pyx files) is for editable installs.
+# Also cython_debug is for editable installs.
+sagelib-clean:
+	@echo "Deleting Sage library build artifacts..."
+	if [ -d "$(SAGE_SRC)" ]; then \
+	    (cd "$(SAGE_SRC)" && \
+	     rm -rf c_lib .cython_version cython_debug; \
+	     rm -rf build; find . -name '*.pyc' -o -name "*.so" | xargs rm -f; \
+	     rm -f $$(find . -name "*.pyx" | sed 's/\(.*\)[.]pyx$$/\1.c \1.cpp/'); \
+	     rm -rf sage/ext/interpreters) \
+	    && (cd "$(SAGE_ROOT)/build/pkgs/sagelib/src/" && rm -rf build); \
+	fi
+
+sage_docbuild-clean:
+	(cd "$(SAGE_ROOT)/build/pkgs/sage_docbuild/src" && rm -rf build)
+
+sage_setup-clean:
+	(cd "$(SAGE_ROOT)/build/pkgs/sage_setup/src" && rm -rf build)
+
+build-clean: clean doc-clean sagelib-clean sage_docbuild-clean
+
+doc-clean:
+	if [ -f "$(SAGE_SRC)"/bin/sage-env-config ]; then \
+	    . "$(SAGE_SRC)"/bin/sage-env-config; \
+	    if [ -n "$$SAGE_LOCAL" ]; then \
+	        rm -rf "$$SAGE_LOCAL/share/doc/sage/inventory"; \
+	        rm -rf "$$SAGE_LOCAL/share/doc/sage/doctrees"; \
+	    fi; \
+	fi; \
+	cd "$(SAGE_SRC)/doc" && $(MAKE) clean
+
+# Deleting src/lib is to get rid of src/lib/pkgconfig
+# that was forgotten to clean in #29082.
+misc-clean:
+	@echo "Deleting build artifacts generated by autoconf, automake, make ..."
+	rm -rf logs
+	rm -rf dist
+	rm -rf tmp
+	rm -f aclocal.m4 config.log confcache
+	rm -rf autom4te.cache
+	rm -f build/make/Makefile build/make/Makefile-auto
+	rm -rf src/lib
+
+bdist-clean: clean
+	$(MAKE) misc-clean
+	@echo "Deleting build artifacts generated by configure ..."
+	rm -f config.status
+
+distclean: build-clean
+	$(MAKE) misc-clean
+	@echo "Deleting all remaining output from build system ..."
+	rm -rf local
+	rm -f src/bin/sage-env-config
+	rm -f prefix venv
+
+# Delete all auto-generated files which are distributed as part of the
+# source tarball
+bootstrap-clean:
+	rm -rf config/install-sh config/compile config/config.guess config/config.sub config/missing configure build/make/Makefile-auto.in
+	rm -f src/doc/en/installation/*.txt
+	rm -rf src/doc/en/reference/spkg/*.rst
+	rm -f environment.yml
+	rm -f src/environment.yml
+	rm -f src/environment-dev.yml
+	rm -f environment-optional.yml
+	rm -f src/environment-optional.yml
+	rm -f src/Pipfile
+	rm -f src/pyproject.toml
+	rm -f src/requirements.txt
+	rm -f src/setup.cfg
+
+# Remove absolutely everything which isn't part of the git repo
+maintainer-clean: distclean bootstrap-clean
+	rm -rf upstream
+
+# Remove everything that is not necessary to run Sage and pass all its
+# doctests.
+micro_release:
+	$(MAKE) sagelib-clean
+	$(MAKE) misc-clean
+	@echo "Stripping binaries ..."
+	LC_ALL=C find local/lib local/bin local/var/lib/sage/venv-python* -type f -exec strip '{}' ';' 2>&1 | grep -v "File format not recognized" |  grep -v "File truncated" || true
+	@echo "Removing sphinx artifacts..."
+	rm -rf local/share/doc/sage/doctrees local/share/doc/sage/inventory
+	@echo "Removing documentation. Inspection in IPython still works."
+	rm -rf local/share/doc local/share/*/doc local/share/*/examples local/share/singular/html
+	@echo "Removing unnecessary files & directories - make will not be functional afterwards anymore"
+	@# We keep src/sage for some doctests that it expect it to be there and
+	@# also because it does not add any weight with rdfind below.
+	@# We need src/bin/ for the scripts that invoke Sage
+	@# We need sage, the script to start Sage
+	@# We need local/, the dependencies and the built Sage library itself.
+	@# We keep VERSION.txt.
+	@# We keep COPYING.txt so we ship a license with this distribution.
+	find . -name . -o -prune ! -name config.status ! -name src ! -name sage ! -name local ! -name VERSION.txt ! -name COPYING.txt ! -name build -exec rm -rf \{\} \;
+	cd src && find . -name . -o -prune ! -name sage ! -name bin -exec rm -rf \{\} \;
+	if command -v rdfind > /dev/null; then \
+		echo "Hardlinking identical files."; \
+		rdfind -makeresultsfile false -makehardlinks true .; \
+	else \
+		echo "rdfind not installed. Not hardlinking identical files."; \
+	fi
+
+# Leaves everything that is needed to make the next "make" fast but removes
+# all the cheap build artifacts that can be quickly regenerated.
+# Trac #30960: We no longer uninstall sagelib.
+fast-rebuild-clean: misc-clean
+	rm -rf upstream/
+	rm -rf build/pkgs/sagelib/src/build/temp.*
+	# The .py files in src/build are restored from src/sage without their
+	# mtimes changed.
+	-find build/pkgs/sagelib/src/build -name '*.py' -exec rm \{\} \;
+	# Remove leftovers from ancient branches
+	rm -rf src/build
+
+###############################################################################
+# Testing
+###############################################################################
+
+TEST_LOG = $(SAGE_ROOT_LOGS)/test.log
+
+TEST_FILES = --all
+
+TEST_FLAGS =
+
+# When the documentation is installed, "optional" also includes all tests marked 'sagemath_doc_html',
+# see https://trac.sagemath.org/ticket/25345, https://trac.sagemath.org/ticket/26110, and
+# https://trac.sagemath.org/ticket/32759
+TEST_OPTIONAL = sage,optional
+
+# Keep track of the top-level *test* Makefile target for logging.
+TEST_TARGET = $@
+
+TEST = ./sage -t --logfile=$(TEST_LOG) $(TEST_FLAGS) --optional=$(TEST_OPTIONAL) $(TEST_FILES)
+
+test: all
+	@echo '### make $(TEST_TARGET): Running $(TEST)' >> $(TEST_LOG)
+	$(TEST)
+
+check:
+	@$(MAKE) test
+
+testall:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" test
+
+testlong:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" test
+
+testalllong:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" testall
+
+ptest:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) -p" test
+
+ptestall:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" ptest
+
+ptestlong:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptest
+
+ptestalllong:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptestall
+
+testoptional:
+	@echo "'make $@' is deprecated; use 'make test'"
+	@$(MAKE) test
+
+testoptionallong:
+	@echo "'make $@' is deprecated; use 'make testlong'"
+	@$(MAKE) testlong
+
+ptestoptional:
+	@echo "'make $@' is deprecated; use 'make ptest'"
+	@$(MAKE) ptest
+
+ptestoptionallong:
+	@echo "'make $@' is deprecated; use 'make ptestlong'"
+	@$(MAKE) ptestlong
+
+# *test*-nodoc targets skip the docbuild and skip all tests that depend on the documentation
+
+test-nodoc: TEST_OPTIONAL := $(TEST_OPTIONAL),!sagemath_doc_html,!sagemath_doc_pdf
+test-nodoc: build
+	@echo '### make $(TEST_TARGET): Running $(TEST)' >> $(TEST_LOG)
+	$(TEST)
+
+check-nodoc:
+	@$(MAKE) test-nodoc
+
+testall-nodoc:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" test-nodoc
+
+testlong-nodoc:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" test-nodoc
+
+testalllong-nodoc:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" testall-nodoc
+
+ptest-nodoc:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) -p" test-nodoc
+
+ptestall-nodoc:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_OPTIONAL="$(TEST_OPTIONAL),external" ptest-nodoc
+
+ptestlong-nodoc:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptest-nodoc
+
+ptestalllong-nodoc:
+	@$(MAKE) TEST_TARGET="$(TEST_TARGET)" TEST_FLAGS="$(TEST_FLAGS) --long" ptestall-nodoc
+
+testoptional-nodoc:
+	@echo "'make $@' is deprecated; use 'make test-nodoc'"
+	@$(MAKE) test-nodoc
+
+testoptionallong-nodoc:
+	@echo "'make $@' is deprecated; use 'make testlong-nodoc'"
+	@$(MAKE) testlong-nodoc
+
+ptestoptional-nodoc:
+	@echo "'make $@' is deprecated; use 'make ptest-nodoc'"
+	@$(MAKE) ptest-nodoc
+
+ptestoptionallong-nodoc:
+	@echo "'make $@' is deprecated; use 'make ptestlong-nodoc'"
+	@$(MAKE) ptestlong-nodoc
+
+###############################################################################
+
+configure: bootstrap src/doc/bootstrap configure.ac src/bin/sage-version.sh m4/*.m4 build/pkgs/*/spkg-configure.m4 build/pkgs/*/type build/pkgs/*/install-requires.txt build/pkgs/*/package-version.txt build/pkgs/*/distros/*.txt
+	./bootstrap -d
+
+install: all
+	@echo "******************************************************************"
+	@echo "The '$@' target is a no-op; 'make' already does 'make install'"
+	@echo "You can change the install prefix from its default"
+	@echo "(the subdirectory 'local') by using ./configure --prefix=PREFIX"
+	@echo "You can also consider using the binary packaging scripts"
+	@echo "from https://github.com/sagemath/binary-pkg"
+	@echo "******************************************************************"
+
+# Setting SAGE_PKGCONFIG is only so that make does not exit with
+# "This Makefile needs to be invoked by build/make/install".
+list:
+	@$(MAKE) --silent build/make/Makefile >&2
+	@$(MAKE) --silent -f build/make/Makefile SAGE_PKGCONFIG=dummy $@
+
+.PHONY: default build dist install micro_release \
+	pypi-sdists pypi-wheels wheels \
+	misc-clean bdist-clean distclean bootstrap-clean maintainer-clean \
+	test check testoptional testall testlong testoptionallong testallong \
+	ptest ptestoptional ptestall ptestlong ptestoptionallong ptestallong \
+	buildbot-python3 list \
+	doc-clean clean sagelib-clean build-clean
diff --git a/pkgs/sage-bootstrap/make/.gitignore b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/make/.gitignore
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rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/make/.gitignore
diff --git a/pkgs/sage-bootstrap/make/Makefile-auto.am b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/make/Makefile-auto.am
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diff --git a/pkgs/sage-bootstrap/make/Makefile.in b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/make/Makefile.in
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diff --git a/pkgs/sage-bootstrap/make/install b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/make/install
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rename from pkgs/sage-bootstrap/make/install
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/dependencies b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/dependencies
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/arch.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/arch.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/conda.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/conda.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/cygwin.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/cygwin.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/debian.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/debian.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/fedora.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/fedora.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/freebsd.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/gentoo.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/gentoo.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/opensuse.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/opensuse.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/distros/repology.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/distros/repology.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/package-version.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/package-version.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/spkg-check.in b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/spkg-check.in
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/spkg-configure.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/spkg-configure.m4
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/4ti2/spkg-install.in b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/4ti2/spkg-install.in
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/_bootstrap/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/_bootstrap/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/_bootstrap/distros/arch.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/_bootstrap/distros/arch.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/_bootstrap/distros/conda.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/_bootstrap/distros/conda.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/cddlib/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/cddlib/distros/freebsd.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/cffi/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/cffi/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/cffi/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/cffi/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/cffi/distros/void.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/cffi/distros/void.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/charset_normalizer/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/charset_normalizer/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/cliquer/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/cliquer/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/cliquer/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/cliquer/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/gfan/distros/repology.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/gfan/distros/repology.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/distros/fedora.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/distros/fedora.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/distros/freebsd.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/distros/gentoo.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/distros/gentoo.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/distros/nix.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/distros/nix.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/distros/opensuse.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/distros/opensuse.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/distros/repology.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/distros/repology.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/givaro/distros/void.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/givaro/distros/void.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/conda.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/conda.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/cygwin.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/cygwin.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/debian.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/debian.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/fedora.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/fedora.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/freebsd.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/gentoo.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/gentoo.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/homebrew.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/homebrew.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/opensuse.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/opensuse.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/repology.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/repology.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/distros/void.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/distros/void.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/glpk/package-version.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/glpk/package-version.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libbraiding/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libbraiding/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libbraiding/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libbraiding/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libffi/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libffi/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libffi/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libffi/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libffi/distros/debian.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libffi/distros/debian.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libffi/distros/void.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libffi/distros/void.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libgd/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libgd/distros/freebsd.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libgd/distros/gentoo.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libgd/distros/gentoo.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libnauty/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libnauty/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libogg/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libogg/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libogg/distros/homebrew.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libogg/distros/homebrew.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libogg/distros/void.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libogg/distros/void.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libogg/package-version.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libogg/package-version.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libogg/spkg-install.in b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libogg/spkg-install.in
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libpng/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libpng/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libpng/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libpng/distros/freebsd.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libpng/distros/homebrew.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libpng/distros/homebrew.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libsemigroups/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libsemigroups/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libsemigroups/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libsemigroups/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/libsemigroups/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/libsemigroups/distros/freebsd.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/openssl/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/openssl/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/perl_term_readline_gnu/distros/gentoo.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/perl_term_readline_gnu/distros/gentoo.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/perl_term_readline_gnu/distros/macports.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/perl_term_readline_gnu/distros/macports.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/perl_term_readline_gnu/distros/opensuse.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/perl_term_readline_gnu/distros/opensuse.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/perl_term_readline_gnu/patches/0001-Always-use-ncurses.patch b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/perl_term_readline_gnu/patches/0001-Always-use-ncurses.patch
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/perl_term_readline_gnu/patches/0002-Makefile.PL-Include-CFLAGS-LDFLAGS.patch b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/perl_term_readline_gnu/patches/0002-Makefile.PL-Include-CFLAGS-LDFLAGS.patch
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/pexpect/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/pexpect/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/pexpect/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/pexpect/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/phitigra/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/phitigra/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/pickleshare/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/pickleshare/SPKG.rst
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/pickleshare/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/pickleshare/checksums.ini
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/pickleshare/install-requires.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/pickleshare/install-requires.txt
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diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/pillow/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/pillow/SPKG.rst
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rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zipp/spkg-install.in
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zipp/type b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zipp/type
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zipp/type
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zipp/type
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/SPKG.rst
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/SPKG.rst
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/SPKG.rst
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/checksums.ini
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/checksums.ini
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/checksums.ini
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/dependencies b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/dependencies
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/dependencies
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/dependencies
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/conda.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/conda.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/conda.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/conda.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/cygwin.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/cygwin.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/cygwin.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/cygwin.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/debian.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/debian.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/debian.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/debian.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/fedora.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/fedora.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/fedora.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/fedora.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/homebrew.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/homebrew.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/homebrew.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/homebrew.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/macports.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/macports.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/macports.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/macports.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/opensuse.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/opensuse.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/opensuse.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/opensuse.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/repology.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/repology.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/repology.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/repology.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/slackware.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/slackware.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/slackware.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/slackware.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/void.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/void.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/distros/void.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/distros/void.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/package-version.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/package-version.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/package-version.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/package-version.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/patches/cygwin-gzopen_w.patch b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/patches/cygwin-gzopen_w.patch
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/patches/cygwin-gzopen_w.patch
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/patches/cygwin-gzopen_w.patch
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/patches/cygwin-windef.diff_bin b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/patches/cygwin-windef.diff_bin
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/patches/cygwin-windef.diff_bin
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/patches/cygwin-windef.diff_bin
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/spkg-configure.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/spkg-configure.m4
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/spkg-configure.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/spkg-configure.m4
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/spkg-install.in b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/spkg-install.in
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/spkg-install.in
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/spkg-install.in
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/type b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/type
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zlib/type
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zlib/type
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/SPKG.rst b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/SPKG.rst
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/SPKG.rst
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/SPKG.rst
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/checksums.ini b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/checksums.ini
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/checksums.ini
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/checksums.ini
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/dependencies b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/dependencies
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/dependencies
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/dependencies
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/arch.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/arch.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/arch.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/arch.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/conda.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/conda.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/conda.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/conda.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/debian.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/debian.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/debian.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/debian.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/fedora.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/fedora.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/fedora.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/fedora.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/freebsd.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/freebsd.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/freebsd.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/freebsd.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/nix.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/nix.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/nix.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/nix.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/opensuse.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/opensuse.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/opensuse.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/opensuse.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/repology.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/repology.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/repology.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/repology.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/void.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/void.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/distros/void.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/distros/void.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/package-version.txt b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/package-version.txt
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/package-version.txt
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/package-version.txt
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/spkg-check.in b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/spkg-check.in
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/spkg-check.in
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/spkg-check.in
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/spkg-configure.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/spkg-configure.m4
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/spkg-configure.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/spkg-configure.m4
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/spkg-install.in b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/spkg-install.in
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/spkg-install.in
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/spkg-install.in
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/type b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/type
similarity index 100%
rename from pkgs/sage-bootstrap/sage_bootstrap/pkgs/zn_poly/type
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/build/pkgs/zn_poly/type
diff --git a/config/config.rpath b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/config/config.rpath
similarity index 100%
rename from config/config.rpath
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/config/config.rpath
diff --git a/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/configure.ac b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/configure.ac
new file mode 100644
index 00000000000..4ab080c6115
--- /dev/null
+++ b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/configure.ac
@@ -0,0 +1,575 @@
+#*****************************************************************************
+#       Copyright (C) 2005-2007 William Stein
+#       Copyright (C) 2009-2011 David Kirkby
+#       Copyright (C) 2012-2016 Jeroen Demeyer
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 2 of the License, or
+# (at your option) any later version.
+#                  http://www.gnu.org/licenses/
+#*****************************************************************************
+
+dnl If you are going to update this, please stick the recommended layout
+dnl in the autoconf manual - i.e.
+
+dnl First check for programs
+dnl Next check for libraries
+dnl Next check for header files
+dnl Next check for types
+dnl Next check for structures
+dnl Next check compiler characteristics
+dnl Next check for library functions
+dnl Next check for system services
+
+dnl Older versions do not support $GFC
+AC_PREREQ([2.69])
+
+AC_DEFUN([SAGE_VERSION], m4_esyscmd_s([. src/bin/sage-version.sh && echo $SAGE_VERSION]))
+AC_INIT([Sage], SAGE_VERSION, [sage-devel@googlegroups.com])
+
+
+AC_COPYRIGHT([GPL version 3])
+AC_CONFIG_SRCDIR([configure.ac])
+AC_CONFIG_AUX_DIR([config])
+
+dnl This is the hierarchy where everything gets installed (SAGE_LOCAL).
+dnl By default, it is the subdirectory local, but the user
+dnl can override it by supplying --prefix=....
+AC_PREFIX_DEFAULT(`pwd -P`/local)
+
+dnl We don't really use automake, but configure needs aclocal and the
+dnl automake library files (like config.guess).
+AM_INIT_AUTOMAKE([1.9.6 foreign])
+
+# Allow "configure --disable-maintainer-mode" to disable timestamp checking
+AM_MAINTAINER_MODE([enable])
+
+dnl Make sure the path to our own m4 macros is always properly set
+dnl and doesn't depend on how autoconf is called.
+AC_CONFIG_MACRO_DIR([m4])
+
+dnl The AC_LIB_RPATH macro comes from gettext, which is one of our bootstrap
+dnl packages. It defines, among other things, the $acl_shlibext variable that
+dnl contains the shared library extension for this system. We already use the
+dnl AM_ICONV macro from gettext (which ultimately calls AC_LIB_RPATH), and we
+dnl avoid involving libtool by using it to get the shared library extension.
+AC_LIB_RPATH
+AC_SUBST(SHLIBEXT, "${acl_shlibext}")
+
+#---------------------------------------------------------
+#
+# This is essentially the configure part of the old "install" file.
+# Over time, this should be changed to proper autoconf style with
+# configure options.
+#
+
+########################################################################
+# Set various environment variables (needed at configure time)
+########################################################################
+
+# Assume current directory is SAGE_ROOT.
+SAGE_ROOT=`pwd -P`
+AC_SUBST(SAGE_ROOT)
+
+SAGE_LOCAL="$prefix"
+# The following line is necessary because the code below
+# inspects stuff in the installation prefix at configure time.
+# This is nonstandard.
+if test "$SAGE_LOCAL" = NONE; then
+    SAGE_LOCAL=local
+    if test -x "$SAGE_LOCAL"/bin/python3; then
+        # Incremental build with an existing installation of python3 spkg
+        # in SAGE_LOCAL or venv in SAGE_LOCAL.  Keep old behavior.
+        SAGE_VENV_AUTO=no
+    else
+        SAGE_VENV_AUTO=yes
+    fi
+else
+    SAGE_VENV_AUTO=no
+fi
+SAGE_SRC="$SAGE_ROOT/src"
+
+AC_ARG_WITH([sage-venv],
+            [AS_HELP_STRING([--with-sage-venv={auto (default),yes,no,SAGE_VENV}],
+                            [put Python packages into an installation hierarchy separate from prefix])],
+            [SAGE_VENV="$withval"],
+            [SAGE_VENV="auto"])
+AC_SUBST([SAGE_VENV])
+
+AC_SUBST([SAGE_DOCS], ['${SAGE_LOCAL}'])dnl Quoted so that it is resolved at build time by shell/Makefile
+
+#---------------------------------------------------------
+
+AC_ARG_ENABLE([build-as-root],
+              [AS_HELP_STRING([--enable-build-as-root],
+                              [allow building Sage as root (for use in containers)])],
+              [enable_build_as_root=$enableval],
+              [enable_build_as_root=no])
+if test "$enable_build_as_root" != yes; then
+   AX_CHECK_ROOT([AC_MSG_ERROR([You cannot build Sage as root, switch to an unprivileged user.  (If building in a container, use --enable-build-as-root.)])], [])
+fi
+
+AC_ARG_ENABLE([fat-binary],
+              [AS_HELP_STRING([--enable-fat-binary],
+                              [build binaries that will run on the widest range of target CPUs (but not relocatable)])],
+              [AC_SUBST(SAGE_FAT_BINARY, "yes")],
+              [])
+
+AC_ARG_VAR(SAGE_FAT_BINARY, set to "yes" to build binaries that will run on the widest range of target CPUs (but not relocatable))
+
+AC_ARG_ENABLE([debug],
+              [AS_HELP_STRING([--enable-debug={no|symbols|yes}],
+                              [controls debugging support: "no" debugging; debugging "symbols" (default); build debug version ("yes")])],
+              [AC_SUBST(SAGE_DEBUG, $enableval)],
+              [])
+
+AC_ARG_VAR(SAGE_DEBUG, controls debugging support: "no" debugging; debugging "symbols" (default); build debug version ("yes"))
+
+AC_ARG_ENABLE([editable],
+              [AS_HELP_STRING([--disable-editable],
+                              [do not use an editable install of the Sage library: changes to Python files will require "sage -b" to rebuild the Sage library])],
+              [AC_SUBST([SAGE_EDITABLE], [$enableval])],
+              [AC_SUBST([SAGE_EDITABLE], [yes])])
+
+# Check whether we are on a supported platform
+AC_CANONICAL_BUILD()
+AC_CANONICAL_HOST()
+
+case $host in
+*-*-sunos*|*-*-solaris2.[1-9])
+AC_MSG_ERROR([[
+Sage is not supported on any version of Solaris earlier than 10.
+Sage has been tested on the first release of Solaris 10
+(03/2005) and works on that. Sage may or may not work with
+your version of Solaris.
+
+More information can be found about Sage on Solaris
+on the Wiki at http://wiki.sagemath.org/solaris]]);;
+
+*-*-darwin[1-7].*)
+AC_MSG_ERROR([[
+Sage has never been built on OS X 10.3 (Panther)
+or earlier. The oldest version of OS X successfully used
+is OS X version 10.4 (Tiger). You might consider updating
+your version of OS X if your hardware permits this, but
+Apple charges for upgrades of OS X]]);;
+
+*-*-hpux*)
+AC_MSG_ERROR([[
+You are attempting to build Sage on HP's HP-UX operating system,
+which is not a supported platform for Sage yet though
+some work has been done on HP-UX. A port does not look to
+be particularly difficult. Some information can be
+found on the Sage Wiki at http://wiki.sagemath.org/HP-UX
+
+If you would like to help port Sage to HP-UX,
+please join the sage-devel discussion list - see
+http://groups.google.com/group/sage-devel
+The Sage community would also appreciate any patches you submit]]);;
+
+*-*-aix*)
+AC_MSG_ERROR([[
+You are attempting to build Sage on IBM's AIX operating system,
+which is not a supported platform for Sage yet. Things may or
+may not work. If you would like to help port Sage to AIX,
+please join the sage-devel discussion list - see
+http://groups.google.com/group/sage-devel
+The Sage community would also appreciate any patches you submit]]);;
+
+*-*-irix*)
+AC_MSG_ERROR([[
+You are attempting to build Sage on SGI's IRIX operating system,
+which is not a supported platform for Sage yet. Things may or
+may not work. If you would like to help port Sage to IRIX,
+please join the sage-devel discussion list - see
+http://groups.google.com/group/sage-devel
+The Sage community would also appreciate any patches you submit]]);;
+
+*-*-osf*)
+AC_MSG_ERROR([[
+You are attempting to build Sage on HP's Tru64 operating system,
+which is not a supported platform for Sage yet. Things may or
+may not work. If you would like to help port Sage to Tru64,
+please join the sage-devel discussion list - see
+http://groups.google.com/group/sage-devel
+The Sage community would also appreciate any patches you submit]]);;
+
+# The following are all supported platforms.
+*-*-freebsd*);;
+*-*-linux*);;
+*-*-darwin*);;
+*-*-solaris*);;
+*-*-cygwin*);;
+
+# Wildcard for other unsupported platforms
+*)
+AC_MSG_ERROR([[
+You are attempting to build Sage on $host,
+which is not a supported platform for Sage yet. Things may or
+may not work. If you would like to help port Sage to $host,
+please join the sage-devel discussion list - see
+http://groups.google.com/group/sage-devel
+The Sage community would also appreciate any patches you submit]]);;
+esac
+
+
+###############################################################################
+# Check general programs
+###############################################################################
+
+AC_PROG_SED
+
+AC_CHECK_PROG(found_ar, ar, yes, no)
+if test x$found_ar != xyes
+then
+    AC_MSG_NOTICE([Sorry, the 'ar' command must be in the path to build AC_PACKAGE_NAME])
+    AC_MSG_NOTICE([On some systems it can be found in /usr/ccs/bin ])
+    AC_MSG_NOTICE(['ar' is also part of the GNU 'binutils' package.])
+    AC_MSG_ERROR([Exiting, as the archiver 'ar' can not be found.])
+fi
+
+AC_CHECK_PROG(found_m4, m4, yes, no)
+if test x$found_m4 != xyes
+then
+    AC_MSG_NOTICE([Sorry, the 'm4' command must be in the path to build AC_PACKAGE_NAME])
+    AC_MSG_NOTICE([On some systems it can be found in /usr/ccs/bin])
+    AC_MSG_NOTICE([See also http://www.gnu.org/software/m4/])
+    AC_MSG_ERROR([Exiting, as the macro processor 'm4' can not be found.])
+fi
+
+m4_ifndef([PKG_PROG_PKG_CONFIG], [m4_errprint(
+[Error: could not locate the pkg-config autoconf macros. These are
+usually located in /usr/share/aclocal/pkg.m4. If your macros are
+in a different location, try setting the environment variable
+ACLOCAL="aclocal -I/other/macro/dir" before running ./bootstrap
+])
+dnl Exit autoconf with exit code 16 in this case. This will be
+dnl caught by the bootstrap script.
+m4_exit(16)])
+
+PKG_PROG_PKG_CONFIG([0.29])
+
+AC_CHECK_PROG(found_ranlib, ranlib, yes, no)
+if test x$found_ranlib != xyes
+then
+    AC_MSG_NOTICE([Sorry, the 'ranlib' command must be in the path to build AC_PACKAGE_NAME])
+    AC_MSG_NOTICE([On some systems it can be found in /usr/ccs/bin ])
+    AC_MSG_NOTICE(['ranlib' is also part of the GNU 'binutils' package.])
+    AC_MSG_ERROR([Exiting, as 'ranlib' can not be found.])
+fi
+
+AC_CHECK_PROG(found_strip, strip, yes, no)
+if test x$found_strip != xyes
+then
+    AC_MSG_NOTICE([Sorry, the 'strip' command must be in the path to build AC_PACKAGE_NAME])
+    AC_MSG_NOTICE([On some systems 'strip' can be found in /usr/ccs/bin ])
+    AC_MSG_NOTICE(['strip' is also part of the GNU 'binutils' package.])
+    AC_MSG_ERROR([Exiting, as 'strip' can not be found.])
+fi
+
+# Check tar
+AC_CACHE_CHECK([for GNU or BSD tar], [ac_cv_path_TAR], [
+AC_PATH_PROGS_FEATURE_CHECK(TAR, [tar gtar], [[
+ac_version_TAR=`$ac_path_TAR --version 2>&1`
+if echo "$ac_version_TAR" | grep >/dev/null GNU; then
+    ac_cv_path_TAR=$ac_path_TAR
+    if test $ac_prog = tar; then
+        ac_path_TAR_found=:
+    fi
+fi
+if echo "$ac_version_TAR" | grep >/dev/null bsdtar; then
+    ac_cv_path_TAR=$ac_path_TAR
+    if test $ac_prog = tar; then
+        ac_path_TAR_found=:
+    fi
+fi
+]],
+[AC_MSG_ERROR([could not find either a GNU or BSD version of tar])],
+[$PATH:/usr/sfw/bin])
+])
+
+command_TAR=`command -v tar 2>/dev/null`
+AS_IF([test x$command_TAR != x$ac_cv_path_TAR],
+      [AC_MSG_ERROR([[found a good version of tar in $ac_cv_path_TAR, but it's not the first "tar" program in your PATH]])]
+)
+
+# Check make (unless MAKE is set)
+if test -z "$MAKE"; then
+    AC_CACHE_CHECK([for GNU make], [ac_cv_path_MAKE], [
+    AC_PATH_PROGS_FEATURE_CHECK(MAKE, [make gmake], [[
+    ac_version_MAKE=`$ac_path_MAKE --version 2>&1`
+    if echo "$ac_version_MAKE" | grep >/dev/null GNU; then
+        ac_cv_path_MAKE=$ac_path_MAKE
+        if test $ac_prog = make; then
+            ac_path_MAKE_found=:
+        fi
+    fi
+    ]],
+    [AC_MSG_ERROR([could not find a GNU version of make])],
+    [$PATH:/usr/sfw/bin])
+    ])
+
+    command_MAKE=`command -v make 2>/dev/null`
+    AS_IF([test x$command_MAKE != x$ac_cv_path_MAKE],
+          [AC_MSG_ERROR([[found GNU make in $ac_cv_path_MAKE, but it's not the first "make" program in your PATH]])])
+fi
+
+# Check for system python
+AC_MSG_CHECKING([for Python])
+if SAGE_BOOTSTRAP_PYTHON=$(build/bin/sage-bootstrap-python -c "import sys; print(sys.executable)"); then
+    AC_MSG_RESULT([$SAGE_BOOTSTRAP_PYTHON])
+else
+    AC_MSG_ERROR([You do not have a suitable version of Python installed])
+fi
+
+# Check for Latex, the use of which is less important in Sage than
+# it used to be, as it was at one time required to build any documentation
+# but this is no longer so.
+AC_CHECK_PROG(found_latex, latex, yes, no)
+if test x$found_latex != xyes
+then
+    AC_MSG_NOTICE([You do not have 'latex', which is recommended, but not])
+    AC_MSG_NOTICE([required. Latex is only really used for building pdf])
+    AC_MSG_NOTICE([documents and for %latex mode in the AC_PACKAGE_NAME notebook.])
+fi
+
+# Check that perl is available, with version 5.8.0 or later.
+# Some packages need perl, however it is not clear whether Sage really
+# requires version >= 5.8.0.  The R package *used* to require it, but
+# not anymore. -- Jeroen Demeyer
+AC_PATH_PROG([PERL],[perl])
+AX_PROG_PERL_VERSION([5.8.0],[],[
+    AC_MSG_ERROR([Exiting, since AC_PACKAGE_NAME requires perl-5.8.0 or later])
+])
+
+###############################################################################
+# Check C/C++/Fortran compilers
+###############################################################################
+
+# Save compiler flags as configured by the user.
+# We have to redo this, because otherwise `AC_PROG_CC` will just overwrite them.
+AC_SUBST(CFLAGS, "$CFLAGS")
+AC_SUBST(CXXFLAGS, "$CXXFLAGS")
+AC_SUBST(FCFLAGS, "$FCFLAGS")
+AC_SUBST(F77FLAGS, "$F77FLAGS")
+AC_ARG_VAR(CFLAGS, C compiler flags)
+AC_ARG_VAR(CXXFLAGS, C compiler flags)
+AC_ARG_VAR(FCFLAGS, Fortran compiler flags)
+AC_ARG_VAR(F77CFLAGS, Fortran 77 compiler flags)
+
+SAGE_CHECK_CONDA_COMPILERS
+
+AC_PROG_CC()
+AC_PROG_CPP()
+AC_PROG_CXX()
+AC_PROG_FC()
+
+AC_SUBST(CC)
+AC_SUBST(FC)
+
+# On darwin, also set the objective C/C++ compilers
+# Checking on all platforms doesn't hurt and stops
+# configure from sending an error when run on non-darwin.
+AC_PROG_OBJC()
+AC_PROG_OBJCXX()
+AC_SUBST(OBJC)
+AC_SUBST(OBJCXX)
+
+AS_IF([test "x$CXX" = x], [AC_MSG_ERROR([a C++ compiler is missing])])
+
+
+###############################################################################
+# Check header files
+###############################################################################
+
+
+# complex.h is one that might not exist on older systems.
+AC_LANG(C++)
+AC_CHECK_HEADER([complex.h],[],[
+    AC_MSG_ERROR([Exiting, since you do not have the 'complex.h' header file.])
+])
+
+
+###############################################################################
+# Check libraries
+###############################################################################
+
+# First check for something that should be in any maths library (sqrt).
+AC_LANG(C++)
+AC_CHECK_LIB(m,sqrt,[],[
+                       AC_MSG_NOTICE([This system has no maths library installed.])
+                       # On AIX this is not installed by default - strange as that might seem.
+                       # but is in a fileset bos.adt.libm. However, the fileset bos.adt
+                       # includes other things that are probably useful.
+                       if test "x`uname`" = 'xAIX'
+                       then
+                          AC_MSG_NOTICE([On AIX, libm is contained in the bos.adt.libm fileset.])
+                          AC_MSG_NOTICE([Actually, we recommend to install the complete bos.adt fileset.])
+                          AC_MSG_NOTICE([This needs to be performed by a system administrator.])
+                       fi
+                       AC_MSG_ERROR([Exiting, since a maths library was not found.])
+                       ])
+
+# Check for system services
+
+# Check that we are not building in a directory containing spaces
+AS_IF([echo "$ac_pwd" |grep " " >/dev/null],
+      AC_MSG_ERROR([the path to the Sage root directory ($ac_pwd) contains a space. Sage will not build correctly in this case])
+)
+
+SAGE_CHECK_OSX_SUPPORTED()
+
+###############################################################################
+# Collect substitutions for build/make/Makefile.in
+###############################################################################
+
+# $(TOOLCHAIN) variable containing prerequisites for the build
+SAGE_TOOLCHAIN=gcc
+if test "$SAGE_INSTALL_CCACHE" = yes ; then
+    SAGE_TOOLCHAIN="$SAGE_TOOLCHAIN ccache"
+fi
+AC_SUBST([SAGE_TOOLCHAIN])
+
+AC_ARG_ENABLE([experimental-packages],
+  [AS_HELP_STRING([--enable-experimental-packages],
+    [allow installing experimental packages (default: no = ask for user confirmation for each package)])])
+AC_ARG_ENABLE([download-from-upstream-url],
+  [AS_HELP_STRING([--enable-download-from-upstream-url],
+    [allow downloading packages from their upstream URL if they cannot be found on the Sage mirrors])])
+
+SAGE_SPKG_OPTIONS=""
+AS_IF([test "x$enable_experimental_packages" = "xyes"], [
+  AS_VAR_APPEND([SAGE_SPKG_OPTIONS], [" -y"])
+])
+AS_IF([test "x$enable_download_from_upstream_url" = "xyes"], [
+  AS_VAR_APPEND([SAGE_SPKG_OPTIONS], [" -o"])
+])
+AC_SUBST([SAGE_SPKG_OPTIONS])
+
+AC_ARG_ENABLE([sagelib],
+  AS_HELP_STRING([--disable-sage_conf],
+                 [disable build of the sage_conf package]), [
+    for pkg in sage_conf; do
+      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
+    done
+  ])
+
+AC_ARG_ENABLE([cvxopt],
+  AS_HELP_STRING([--disable-cvxopt],
+                 [disable build of the cvxopt package and its prerequisite suitesparse]), [
+    for pkg in cvxopt suitesparse; do
+      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
+    done
+  ])
+
+AC_ARG_ENABLE([notebook],
+  AS_HELP_STRING([--disable-notebook],
+                 [disable build of the Jupyter notebook and related packages]), [
+    for pkg in notebook nbconvert beautifulsoup4 sagenb_export nbformat nbclient terminado send2trash prometheus_client mistune pandocfilters bleach defusedxml jsonschema jupyter_jsmol argon2_cffi; do
+      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
+    done
+  ])
+
+AS_IF([test "$SAGE_ENABLE_notebook" = no -a "$SAGE_ENABLE_sagelib" = no], [
+    for pkg in jupyter_client ipykernel ipython zeromq pyzmq; do
+      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
+    done
+  ])
+
+AC_ARG_ENABLE([r],
+  AS_HELP_STRING([--disable-r],
+                 [disable build of the R package and related packages]), [
+    for pkg in r rpy2 r_jupyter pcre; do
+      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
+    done
+  ])
+
+AC_ARG_ENABLE([doc],
+  AS_HELP_STRING([--disable-doc],
+                 [disable build of the Sage documentation and packages depending on it]), [
+    dnl Disable packages needed for docbuilding
+    for pkg in sage_docbuild alabaster babel snowballstemmer imagesize sphinx sphinxcontrib_devhelp sphinxcontrib_jsmath sphinxcontrib_serializinghtml sphinxcontrib_applehelp sphinxcontrib_htmlhelp sphinxcontrib_qthelp sphinxcontrib_websupport jupyter_sphinx; do
+      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
+    done
+    AS_VAR_IF([enableval], [no], [dnl Disable the docbuild by disabling the install tree for documentation
+        AS_VAR_SET([SAGE_DOCS], [])dnl
+    ])
+  ])
+
+AC_ARG_ENABLE([sagelib],
+  AS_HELP_STRING([--disable-sagelib],
+                 [disable build of the Sage library and packages depending on it]), [
+    for pkg in sagelib sage_docbuild sage_setup; do
+      AS_VAR_SET([SAGE_ENABLE_$pkg], [$enableval])
+    done
+  ])
+
+dnl Packages that require a special override to use the SPKG
+dnl when the system package is not usable.
+AS_VAR_SET([sage_use_system_gcc], [force])
+
+SAGE_SPKG_COLLECT()
+
+dnl AC_CONFIG_HEADERS([config.h])
+AC_CONFIG_FILES([build/make/Makefile-auto build/make/Makefile])
+AC_CONFIG_FILES([src/bin/sage-env-config src/bin/sage-src-env-config build/bin/sage-build-env-config])
+
+AC_CONFIG_FILES([pkgs/sage-conf/_sage_conf/_conf.py])
+
+dnl Create basic directories needed for Sage
+AC_CONFIG_COMMANDS(mkdirs,
+    [
+        for d in "$SAGE_LOGS" "$SAGE_LOCAL" \
+            "$SAGE_LOCAL/bin" "$SAGE_LOCAL/etc" \
+            "$SAGE_LOCAL/include" "$SAGE_LOCAL/lib" \
+            "$SAGE_LOCAL/lib/pkgconfig" \
+            "$SAGE_SHARE" "$SAGE_LOCAL/var/lib/sage/installed"; do
+                AC_MSG_NOTICE([creating directory $d])
+                mkdir -p "$d" || AC_MSG_ERROR(could not create $d)
+        done
+
+        if test -d "$SAGE_LOCAL/lib64"; then
+            if test ! -L "$SAGE_LOCAL/lib64"; then
+                AC_MSG_NOTICE([[$SAGE_LOCAL/lib64 is not a symlink, see Trac #19782]])
+                AC_MSG_ERROR([[Cannot perform incremental update, run "make distclean && make"]])
+            fi
+        else
+            AC_MSG_NOTICE([[creating symbolic link lib64 -> lib]])
+            ln -s lib "$SAGE_LOCAL/lib64"
+        fi
+    ],
+    [
+        SAGE_LOGS="$SAGE_ROOT/logs/pkgs"
+        SAGE_LOCAL="$SAGE_LOCAL"
+        SAGE_SHARE="$SAGE_LOCAL/share"
+    ])
+
+AC_CONFIG_COMMANDS(links, [
+    dnl Create links for the convenience of users
+    SYMLINK="${ac_top_build_prefix}prefix"
+    AS_IF([test -L "$SYMLINK" -o ! -e "$SYMLINK"], [
+        AC_MSG_NOTICE([creating convenience symlink $SYMLINK -> $SAGE_LOCAL])
+        rm -f "$SYMLINK"
+        ln -sf "$SAGE_LOCAL" "$SYMLINK"
+    ], [
+        AC_MSG_NOTICE([cannot create convenience symlink $SYMLINK -> $SAGE_LOCAL because the file exists and is not a symlink; this is harmless])
+    ])
+    SYMLINK="${ac_top_build_prefix}venv"
+    AS_IF([test -L "$SYMLINK" -o ! -e "$SYMLINK"], [
+        AC_MSG_NOTICE([creating convenience symlink $SYMLINK -> $SAGE_VENV])
+        rm -f "$SYMLINK"
+        ln -sf "$SAGE_VENV" "$SYMLINK"
+    ], [
+        AC_MSG_NOTICE([cannot create convenience symlink $SYMLINK -> $SAGE_VENV because the file exists and is not a symlink; this is harmless])
+    ])
+], [
+    SAGE_LOCAL="$SAGE_LOCAL"
+    eval SAGE_VENV="$SAGE_VENV"dnl eval so as to evaluate the embedded ${SAGE_LOCAL}
+])
+
+AC_OUTPUT()
+
+SAGE_SYSTEM_PACKAGE_NOTICE()
+
+dnl vim:syntax=m4
diff --git a/m4/ax_absolute_header.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_absolute_header.m4
similarity index 100%
rename from m4/ax_absolute_header.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_absolute_header.m4
diff --git a/m4/ax_boost_base.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_boost_base.m4
similarity index 100%
rename from m4/ax_boost_base.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_boost_base.m4
diff --git a/m4/ax_c_check_flag.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_c_check_flag.m4
similarity index 100%
rename from m4/ax_c_check_flag.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_c_check_flag.m4
diff --git a/m4/ax_check_compile_flag.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_check_compile_flag.m4
similarity index 100%
rename from m4/ax_check_compile_flag.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_check_compile_flag.m4
diff --git a/m4/ax_check_openssl.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_check_openssl.m4
similarity index 100%
rename from m4/ax_check_openssl.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_check_openssl.m4
diff --git a/m4/ax_check_root.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_check_root.m4
similarity index 100%
rename from m4/ax_check_root.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_check_root.m4
diff --git a/m4/ax_compare_version.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_compare_version.m4
similarity index 100%
rename from m4/ax_compare_version.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_compare_version.m4
diff --git a/m4/ax_compiler_vendor.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_compiler_vendor.m4
similarity index 100%
rename from m4/ax_compiler_vendor.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_compiler_vendor.m4
diff --git a/m4/ax_cxx_compile_stdcxx.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_cxx_compile_stdcxx.m4
similarity index 100%
rename from m4/ax_cxx_compile_stdcxx.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_cxx_compile_stdcxx.m4
diff --git a/m4/ax_cxx_compile_stdcxx_11.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_cxx_compile_stdcxx_11.m4
similarity index 100%
rename from m4/ax_cxx_compile_stdcxx_11.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_cxx_compile_stdcxx_11.m4
diff --git a/m4/ax_gcc_option.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gcc_option.m4
similarity index 100%
rename from m4/ax_gcc_option.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gcc_option.m4
diff --git a/m4/ax_gcc_version.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gcc_version.m4
similarity index 100%
rename from m4/ax_gcc_version.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gcc_version.m4
diff --git a/m4/ax_gxx_option.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gxx_option.m4
similarity index 100%
rename from m4/ax_gxx_option.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gxx_option.m4
diff --git a/m4/ax_gxx_version.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gxx_version.m4
similarity index 100%
rename from m4/ax_gxx_version.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_gxx_version.m4
diff --git a/m4/ax_openmp.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_openmp.m4
similarity index 100%
rename from m4/ax_openmp.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_openmp.m4
diff --git a/m4/ax_prog_perl_modules.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_prog_perl_modules.m4
similarity index 100%
rename from m4/ax_prog_perl_modules.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_prog_perl_modules.m4
diff --git a/m4/ax_prog_perl_version.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_prog_perl_version.m4
similarity index 100%
rename from m4/ax_prog_perl_version.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_prog_perl_version.m4
diff --git a/m4/ax_zmq.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_zmq.m4
similarity index 100%
rename from m4/ax_zmq.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ax_zmq.m4
diff --git a/m4/iconv.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/iconv.m4
similarity index 100%
rename from m4/iconv.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/iconv.m4
diff --git a/m4/libcurl.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/libcurl.m4
similarity index 100%
rename from m4/libcurl.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/libcurl.m4
diff --git a/m4/ppl.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ppl.m4
similarity index 100%
rename from m4/ppl.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/ppl.m4
diff --git a/m4/sage_check_conda_compilers.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_conda_compilers.m4
similarity index 100%
rename from m4/sage_check_conda_compilers.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_conda_compilers.m4
diff --git a/m4/sage_check_osx_supported.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_osx_supported.m4
similarity index 100%
rename from m4/sage_check_osx_supported.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_osx_supported.m4
diff --git a/m4/sage_check_pari_dep.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_pari_dep.m4
similarity index 100%
rename from m4/sage_check_pari_dep.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_pari_dep.m4
diff --git a/m4/sage_check_python_for_venv.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_python_for_venv.m4
similarity index 100%
rename from m4/sage_check_python_for_venv.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_check_python_for_venv.m4
diff --git a/m4/sage_spkg_collect.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_spkg_collect.m4
similarity index 100%
rename from m4/sage_spkg_collect.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_spkg_collect.m4
diff --git a/m4/sage_spkg_configure.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_spkg_configure.m4
similarity index 100%
rename from m4/sage_spkg_configure.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_spkg_configure.m4
diff --git a/m4/sage_spkg_enable.m4 b/pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_spkg_enable.m4
similarity index 100%
rename from m4/sage_spkg_enable.m4
rename to pkgs/sage-bootstrap/sage_bootstrap/sage_root_source/m4/sage_spkg_enable.m4