From 7470754faaa502877cbf4bad74ee0446c3cc7c13 Mon Sep 17 00:00:00 2001 From: TernovojD Date: Fri, 23 Aug 2024 15:19:19 +0200 Subject: [PATCH] added mason_additional_args parameter --- modules/mason/simulator/main.nf | 3 ++- nextflow.config | 1 + 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/modules/mason/simulator/main.nf b/modules/mason/simulator/main.nf index 8a272eb..7ca1076 100644 --- a/modules/mason/simulator/main.nf +++ b/modules/mason/simulator/main.nf @@ -39,7 +39,8 @@ process MASON_SIMULATOR { --fragment-max-size ${params.fragment_max_size} \ --fragment-mean-size ${params.fragment_mean_size} \ --fragment-size-std-dev ${params.fragment_size_std_dev} \ - --illumina-read-length ${params.illumina_read_length} + --illumina-read-length ${params.illumina_read_length} \ + ${params.mason_additional_args} """ diff --git a/nextflow.config b/nextflow.config index e3169ec..ea8d256 100644 --- a/nextflow.config +++ b/nextflow.config @@ -25,6 +25,7 @@ params { fragment_mean_size = 500 fragment_size_std_dev = 20 illumina_read_length = 150 + mason_additional_args = "" // [LEGACY] Nanosim Oxford Nanopore (WGS) - Read simulation parameters dna_type = 'linear'