DESCRIPTION

Package: methylscaper
Type: Package
Title: Visualization of Methylation Data
Description: methylscaper is an R package for processing and visualizing data jointly
  profiling methylation and chromatin accessibility (MAPit, NOMe-seq, scNMT-seq, nanoNOMe,
  etc.). The package supports both single-cell and single-molecule data, and 
  a common interface for jointly visualizing both data types through the generation of
  ordered representational methylation-state matrices. The Shiny app allows for an 
  interactive seriation process of refinement and re-weighting that optimally 
  orders the cells or DNA molecules to discover methylation patterns and nucleosome 
  positioning.
Version: 1.13.3
Authors@R: c(person("Bacher", "Rhonda", email = "rbacher@ufl.edu", role = c("aut", "cre")), person("Parker", "Knight", role = c("aut")))
Depends: R (>= 4.4.0)
License: GPL-2
Encoding: UTF-8
Imports:
  shiny,
  shinyjs,
  seriation,
  BiocParallel,
  seqinr,
  Biostrings,
  pwalign,
  Rfast,
  grDevices, 
  graphics, 
  stats, 
  utils,
  tools,
  methods,
  shinyFiles,
  data.table,
  SummarizedExperiment
RoxygenNote: 7.3.2
Suggests: 
  BiocStyle, 
  knitr, 
  rmarkdown, 
  devtools,
  R.utils
VignetteBuilder: knitr
biocViews: 
	DNAMethylation,
	Epigenetics,
	Sequencing,
	Visualization,
	SingleCell,
	NucleosomePositioning
URL: https://github.com/rhondabacher/methylscaper/
BugReports: https://github.com/rhondabacher/methylscaper/issues