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DESCRIPTION
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Package: ClustPhy
Type: Package
Title: Phylogenetic Trees Clustering
Version: 0.1.0
Author: Yuzi Li
Maintainer: Yuzi Li <rainarainarain@hotmail.com>
Description: ClustPhy provides a number of options for clustering phylogenetic
trees (including k-means, expectation maximization, and hierarchical
clustering), to compare clusterings (variation of information, gap
statistics), and visualize the clusters. This simplifies the workflow of
finding the optimal clusters for a phylogenetic tree and provides an easier
means to visualize results.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
Roxygen: list(markdown = TRUE)
Depends:
R (>= 2.10)
Imports:
cluster,
ape,
mclust,
factoextra,
shiny
Suggests:
rmarkdown,
knitr,
testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr