diff --git a/README.md b/README.md index 4396a1a..5fc9ded 100644 --- a/README.md +++ b/README.md @@ -97,29 +97,33 @@ All assignments are due on the date stated in class. Ten percent of the grade wi - Mar 17, 2022: SNP and INDEL discovery (part 1) - [slides](https://docs.google.com/presentation/d/1D4XY9XxQiyYcwwhomRRONxCPr_bJvcC0WM4sb8vouZM/edit?usp=sharing) - [youtube](https://www.youtube.com/watch?v=2ro9WCOpQqI) -- Mar 11, 2020: SNP and INDEL discovery (part 2) - - [slides](https://docs.google.com/presentation/d/12jeJQPbntPPPGYszIH1l9u83mXFVU1XdJw-bNgbFu28/edit?usp=sharing) - - [youtube](https://www.youtube.com/watch?v=FY9t3sQMlJw) -- Mar 16, 2020: VCF format, Hardy Weinberg Equilibrium, VCF toolkits +- Mar 22, 2022: Rates and patterns of human germline variation + - [slides]() + - [youtube]() +- Mar 24, 2022: VCF format, Hardy Weinberg Equilibrium, VCF toolkits - [slides](https://docs.google.com/presentation/d/1kt2br-ZcDIzRqx__oTdC8i4NlAhluWX2WsPT_clqMaI/edit?usp=sharing) - [youtube](https://www.youtube.com/watch?v=FZtWnNghRkA) -- Mar 18, 2020: VCF annotation and interpetation +- Mar 29, 2022: VCF annotation and interpetation - [slides](https://docs.google.com/presentation/d/1DN99IgciDD05b5Ve_Eaym0ORPhuDFAPU1fXBPoOq5Vo/edit?usp=sharing) - [youtube](https://www.youtube.com/watch?v=M8UfW8RNTKI) -- Mar 23, 2020: Genome Annotation and Resources +- Mar 31, 2022: Genome Annotation and Resources - [slides](https://docs.google.com/presentation/d/1PU4ADdlmZu9jOkUa_FgrS5ppTJ3CsCIXwn1W9WkzApI/edit?usp=sharing) - [youtube](https://www.youtube.com/watch?v=ElnZGlzb4qo) -- Mar 25, 2020: Genome Annotation Formats. +- April 5, 2022: Genome Annotation Formats. - [slides - 1](https://docs.google.com/presentation/d/1Eylp9pcU8xEhyBJJvL57pSjSukQdhBnG1sWCvJlCngs/edit?usp=sharing) - [slides - 2](https://docs.google.com/presentation/d/1yXFB72CHPiVH8zCKBwBOQg-ssmzS9xUOcTNhcsQgV1c/edit?usp=sharing) - [youtube](https://www.youtube.com/watch?v=tq3GeDXbZXA) -- Homework #6: https://gist.github.com/arq5x/c0eb84bce2086fbfbe9184668ef87b31#file-hw6-md + +- April 7, 2022: Genome arithmetic with bedtools - [bedtools tutorial](http://quinlanlab.org/tutorials/bedtools/bedtools.html) - [bedtools docs](https://bedtools.readthedocs.io/en/latest/index.html#) - [youtube](https://www.youtube.com/watch?v=1R1KocKEzYY) + + + +TBD - Apr 1, 2020: Real world analyses with bedtools. - [slides](https://docs.google.com/presentation/d/1-LR5tHGbvJtmk5rdyBihzd_9viI15KnTtFOrmAHdjsc/edit?usp=sharing) - [youtube](https://www.youtube.com/watch?v=qV6Iv1Dco-M)