diff --git a/independent-projects/bootstrap/app-model/src/main/java/io/quarkus/bootstrap/model/MutableJarApplicationModel.java b/independent-projects/bootstrap/app-model/src/main/java/io/quarkus/bootstrap/model/MutableJarApplicationModel.java
index ebceb7d97089f..db561e98b8774 100644
--- a/independent-projects/bootstrap/app-model/src/main/java/io/quarkus/bootstrap/model/MutableJarApplicationModel.java
+++ b/independent-projects/bootstrap/app-model/src/main/java/io/quarkus/bootstrap/model/MutableJarApplicationModel.java
@@ -4,7 +4,6 @@
 import java.nio.file.Path;
 import java.util.ArrayList;
 import java.util.Collection;
-import java.util.Collections;
 import java.util.HashMap;
 import java.util.HashSet;
 import java.util.List;
@@ -41,14 +40,21 @@ public MutableJarApplicationModel(String baseName, Map<ArtifactKey, List<String>
             String userProvidersDirectory, String appArchivePath) {
         this.baseName = baseName;
         this.userProvidersDirectory = userProvidersDirectory;
-        appArtifact = new SerializedDep(appModel.getAppArtifact(), paths, 0);
-        appArtifact.paths = Collections.singletonList(appArchivePath.replace('\\', '/'));
+        appArtifact = new SerializedDep(appModel.getAppArtifact(),
+                paths.getOrDefault(appModel.getAppArtifact().getKey(), List.of()), 0);
+        appArtifact.paths = List.of(appArchivePath.replace('\\', '/'));
+        localProjectArtifacts = new HashSet<>(appModel.getReloadableWorkspaceDependencies());
+        excludedResources = new HashMap<>(appModel.getRemovedResources());
         dependencies = new ArrayList<>(appModel.getDependencies().size());
         for (ResolvedDependency i : appModel.getDependencies()) {
-            dependencies.add(new SerializedDep(i, paths, i.getFlags()));
+            final List<String> pathList = paths.get(i.getKey());
+            if (pathList != null && !pathList.isEmpty()) {
+                dependencies.add(new SerializedDep(i, pathList, i.getFlags()));
+            } else {
+                localProjectArtifacts.remove(i.getKey());
+                excludedResources.remove(i.getKey());
+            }
         }
-        localProjectArtifacts = new HashSet<>(appModel.getReloadableWorkspaceDependencies());
-        excludedResources = new HashMap<>(appModel.getRemovedResources());
         capabilitiesContracts = new ArrayList<>(appModel.getExtensionCapabilities());
         this.platformImports = appModel.getPlatforms();
     }
@@ -83,15 +89,11 @@ private static class SerializedDep extends GACTV {
         private List<String> paths;
         private final int flags;
 
-        public SerializedDep(ResolvedDependency dependency, Map<ArtifactKey, List<String>> paths, int flags) {
+        public SerializedDep(ResolvedDependency dependency, List<String> paths, int flags) {
             super(dependency.getGroupId(), dependency.getArtifactId(),
                     dependency.getClassifier(), dependency.getType(),
                     dependency.getVersion());
-            List<String> pathList = paths.get(dependency.getKey());
-            if (pathList == null) {
-                pathList = Collections.emptyList();
-            }
-            this.paths = pathList.stream().map(s -> s.replace('\\', '/')).collect(Collectors.toList());
+            this.paths = paths.stream().map(s -> s.replace('\\', '/')).collect(Collectors.toList());
             this.flags = flags;
         }
 
@@ -104,6 +106,7 @@ public ResolvedDependencyBuilder getDep(Path root) {
                     .setGroupId(getGroupId())
                     .setArtifactId(getArtifactId())
                     .setClassifier(getClassifier())
+                    .setType(getType())
                     .setVersion(getVersion())
                     .setResolvedPaths(builder.build())
                     .setFlags(flags);