From 4e6163184356232ab07d95d1291c6030b0984546 Mon Sep 17 00:00:00 2001
From: Liz Gehret <54517601+lizgehret@users.noreply.github.com>
Date: Tue, 25 Jun 2024 12:03:16 -0700
Subject: [PATCH] MAINT: update env files with py39 (#585)

---
 source/install/native.rst | 72 +++++++++++++++++++--------------------
 1 file changed, 36 insertions(+), 36 deletions(-)

diff --git a/source/install/native.rst b/source/install/native.rst
index dfc45b5..cc393ad 100644
--- a/source/install/native.rst
+++ b/source/install/native.rst
@@ -70,32 +70,32 @@ QIIME 2 Amplicon Distribution
             </p>
          </div>
          <div id="amplicon-macOS-intel" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-osx-conda.yml
-   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-osx-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
+   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py38-osx-conda.yml</pre>
+   <pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="amplicon-macOS-apple-silicon" class="tab-pane fade">
             <p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-osx-conda.yml
-   CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-osx-conda.yml
+            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
+   CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml
    conda activate qiime2-amplicon-2024.5
    conda config --env --set subdir osx-64</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py38-osx-conda.yml</pre>
+   <pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="amplicon-linux" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-linux-conda.yml
-   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
+   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
+   <pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
          </div>
          <div id="amplicon-wsl" class="tab-pane fade">
             <p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-linux-conda.yml
-   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
+   conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
+   <pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
          </div>
       </div>
    </div>
@@ -120,32 +120,32 @@ QIIME 2 Metagenome Distribution
             </p>
          </div>
          <div id="metagenome-macOS-intel" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-osx-conda.yml
-   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-osx-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
+   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py38-osx-conda.yml</pre>
+   <pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="metagenome-macOS-apple-silicon" class="tab-pane fade">
             <p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-osx-conda.yml
-   CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-osx-conda.yml
+            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
+   CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml
    conda activate qiime2-metagenome-2024.5
    conda config --env --set subdir osx-64</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py38-osx-conda.yml</pre>
+   <pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="metagenome-linux" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-linux-conda.yml
-   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
+   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
+   <pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
          </div>
          <div id="metagenome-wsl" class="tab-pane fade">
             <p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-linux-conda.yml
-   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
+   conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
+   <pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
          </div>
       </div>
    </div>
@@ -170,32 +170,32 @@ QIIME 2 Tiny Distribution
             </p>
          </div>
          <div id="tiny-macOS-intel" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-osx-conda.yml
-   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-osx-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
+   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py38-osx-conda.yml</pre>
+   <pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="tiny-macOS-apple-silicon" class="tab-pane fade">
             <p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-osx-conda.yml
-   CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-osx-conda.yml
+            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
+   CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml
    conda activate qiime2-tiny-2024.5
    conda config --env --set subdir osx-64</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py38-osx-conda.yml</pre>
+   <pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
          </div>
          <div id="tiny-linux" class="tab-pane fade">
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-linux-conda.yml
-   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
+   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
+   <pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
          </div>
          <div id="tiny-wsl" class="tab-pane fade">
             <p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
-            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-linux-conda.yml
-   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
+            <pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
+   conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
    <span>OPTIONAL CLEANUP</span>
-   <pre>rm qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
+   <pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
          </div>
       </div>
    </div>