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What happened: Tests failed, also reported in #5564 and relatd to #5559 What you expected to happen:
Minimal Complete Verifiable Example:
cd xarray pip install -e . pip install h5netcdf pytest-xdist netcdf4 py.test -n 4
======================================================= FAILURES ======================================================= _______________________________________ TestH5NetCDFFileObject.test_open_fileobj _______________________________________ [gw3] linux -- Python 3.9.5 /home/joeperdefloep/miniconda3/envs/xr-dev/bin/python3.9 self = <xarray.tests.test_backends.TestH5NetCDFFileObject object at 0x7f051a6b59a0> def test_open_fileobj(self): # open in-memory datasets instead of local file paths expected = create_test_data().drop_vars("dim3") expected.attrs["foo"] = "bar" with create_tmp_file() as tmp_file: expected.to_netcdf(tmp_file, engine="h5netcdf") with open(tmp_file, "rb") as f: with open_dataset(f, engine="h5netcdf") as actual: assert_identical(expected, actual) f.seek(0) with open_dataset(f) as actual: assert_identical(expected, actual) f.seek(0) with BytesIO(f.read()) as bio: with open_dataset(bio, engine="h5netcdf") as actual: assert_identical(expected, actual) f.seek(0) with pytest.raises(TypeError, match="not a valid NetCDF 3"): > open_dataset(f, engine="scipy") /mnt/e/Git/xarray/xarray/tests/test_backends.py:2887: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /mnt/e/Git/xarray/xarray/backends/api.py:483: in open_dataset backend = plugins.get_backend(engine) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ engine = 'scipy' def get_backend(engine): """Select open_dataset method based on current engine.""" if isinstance(engine, str): engines = list_engines() if engine not in engines: > raise ValueError( f"unrecognized engine {engine} must be one of: {list(engines)}" ) E ValueError: unrecognized engine scipy must be one of: ['netcdf4', 'h5netcdf', 'store'] /mnt/e/Git/xarray/xarray/backends/plugins.py:156: ValueError ______________________________________________________ test_3641 _______________________________________________________ [gw0] linux -- Python 3.9.5 /home/joeperdefloep/miniconda3/envs/xr-dev/bin/python3.9 @requires_cftime def test_3641(): times = xr.cftime_range("0001", periods=3, freq="500Y") da = xr.DataArray(range(3), dims=["time"], coords=[times]) > da.interp(time=["0002-05-01"]) /mnt/e/Git/xarray/xarray/tests/test_interp.py:733: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /mnt/e/Git/xarray/xarray/core/dataarray.py:1687: in interp ds = self._to_temp_dataset().interp( /mnt/e/Git/xarray/xarray/core/dataset.py:3146: in interp variables[name] = missing.interp(var, var_indexers, method, **kwargs) /mnt/e/Git/xarray/xarray/core/missing.py:633: in interp interped = interp_func( /mnt/e/Git/xarray/xarray/core/missing.py:752: in interp_func return _interpnd(var, x, new_x, func, kwargs) /mnt/e/Git/xarray/xarray/core/missing.py:770: in _interpnd return _interp1d(var, x, new_x, func, kwargs) /mnt/e/Git/xarray/xarray/core/missing.py:758: in _interp1d rslt = func(x, var, assume_sorted=True, **kwargs)(np.ravel(new_x)) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <[AttributeError("'ScipyInterpolator' object has no attribute 'method'") raised in repr()] ScipyInterpolator object at 0x7f1aa547fc40> xi = <xarray.IndexVariable 'time' (time: 2)> array([0.00000e+00, 1.57788e+19]), yi = array([0, 1]), method = 'linear' fill_value = None, assume_sorted = True, copy = False, bounds_error = False, order = None, kwargs = {} def __init__( self, xi, yi, method=None, fill_value=None, assume_sorted=True, copy=False, bounds_error=False, order=None, **kwargs, ): > from scipy.interpolate import interp1d E ModuleNotFoundError: No module named 'scipy' /mnt/e/Git/xarray/xarray/core/missing.py:129: ModuleNotFoundError =================================================== warnings summary =================================================== xarray/tests/test_dataarray.py::TestReduce1D::test_min[x3-5-2-1] xarray/tests/test_dataarray.py::TestReduce1D::test_max[x3-5-2-1] xarray/tests/test_dataarray.py::TestReduce2D::test_min[x2-minindex2-maxindex2-nanindex2] xarray/tests/test_dataarray.py::TestReduce2D::test_max[x2-minindex2-maxindex2-nanindex2] /home/joeperdefloep/miniconda3/envs/xr-dev/lib/python3.9/site-packages/numpy/core/fromnumeric.py:86: RuntimeWarning: invalid value encountered in reduce return ufunc.reduce(obj, axis, dtype, out, **passkwargs) -- Docs: https://docs.pytest.org/en/stable/warnings.html =============================================== short test summary info ================================================ FAILED xarray/tests/test_backends.py::TestH5NetCDFFileObject::test_open_fileobj - ValueError: unrecognized engine sci... FAILED xarray/tests/test_interp.py::test_3641 - ModuleNotFoundError: No module named 'scipy' ============= 2 failed, 8243 passed, 3776 skipped, 29 xfailed, 26 xpassed, 4 warnings in 229.01s (0:03:49) =============
Anything else we need to know?:
Environment:
commit: a874739 python: 3.9.5 | packaged by conda-forge | (default, Jun 19 2021, 00:32:32) [GCC 9.3.0] python-bits: 64 OS: Linux OS-release: 4.19.128-microsoft-standard machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: C.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.0 libnetcdf: 4.7.4
xarray: 0.18.2.dev69+gc472f8a4 pandas: 1.2.5 numpy: 1.21.0 scipy: None netCDF4: 1.5.7 pydap: None h5netcdf: 0.11.0 h5py: 3.3.0 Nio: None zarr: None cftime: 1.5.0 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: None cartopy: None seaborn: None numbagg: None pint: None setuptools: 49.6.0.post20210108 pip: 21.1.3 conda: None pytest: 6.2.4 IPython: None sphinx: None
The text was updated successfully, but these errors were encountered:
No branches or pull requests
What happened:
Tests failed, also reported in #5564 and relatd to #5559
What you expected to happen:
Minimal Complete Verifiable Example:
Anything else we need to know?:
Environment:
Output of xr.show_versions()
INSTALLED VERSIONS
commit: a874739
python: 3.9.5 | packaged by conda-forge | (default, Jun 19 2021, 00:32:32)
[GCC 9.3.0]
python-bits: 64
OS: Linux
OS-release: 4.19.128-microsoft-standard
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: C.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.12.0
libnetcdf: 4.7.4
xarray: 0.18.2.dev69+gc472f8a4
pandas: 1.2.5
numpy: 1.21.0
scipy: None
netCDF4: 1.5.7
pydap: None
h5netcdf: 0.11.0
h5py: 3.3.0
Nio: None
zarr: None
cftime: 1.5.0
nc_time_axis: None
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: None
dask: None
distributed: None
matplotlib: None
cartopy: None
seaborn: None
numbagg: None
pint: None
setuptools: 49.6.0.post20210108
pip: 21.1.3
conda: None
pytest: 6.2.4
IPython: None
sphinx: None
The text was updated successfully, but these errors were encountered: