From 2a66d25bd90f6851591855c70f026850e7aba6c0 Mon Sep 17 00:00:00 2001 From: Matt Green Date: Thu, 14 Nov 2024 14:25:29 -0800 Subject: [PATCH] Add pdocs for python documentation (#60) * update python docs * add pdocs and pdocs action * switch to uv from rye * update python docs action * change name * update readme to mention uv instead of rye * run docs on push to main * only run deploy when merged --- .github/workflows/python-docs.yml | 65 + py-denormalized/.gitignore | 1 + py-denormalized/README.md | 9 +- py-denormalized/pdocs/module.html.jinja2 | 7 + py-denormalized/pyproject.toml | 29 +- .../python/denormalized/__init__.py | 19 + .../python/denormalized/context.py | 40 +- .../python/denormalized/data_stream.py | 120 +- .../python/denormalized/feast_data_stream.py | 43 +- py-denormalized/python/denormalized/utils.py | 20 +- .../python/examples/stream_aggregate.py | 2 +- py-denormalized/requirements-dev.lock | 278 --- py-denormalized/requirements.lock | 21 - py-denormalized/src/common.rs | 0 py-denormalized/uv.lock | 2157 +++++++++++++++++ 15 files changed, 2442 insertions(+), 369 deletions(-) create mode 100644 .github/workflows/python-docs.yml create mode 100644 py-denormalized/pdocs/module.html.jinja2 delete mode 100644 py-denormalized/requirements-dev.lock delete mode 100644 py-denormalized/requirements.lock delete mode 100644 py-denormalized/src/common.rs create mode 100644 py-denormalized/uv.lock diff --git a/.github/workflows/python-docs.yml b/.github/workflows/python-docs.yml new file mode 100644 index 0000000..5eba2aa --- /dev/null +++ b/.github/workflows/python-docs.yml @@ -0,0 +1,65 @@ +name: python-docs + +on: + push: + branches: ["main"] + paths: + - "py-denormalized/**" + pull_request: + branches: ["main"] + paths: + - "py-denormalized/**" + +# security: restrict permissions for CI jobs. +permissions: + contents: read + +jobs: + # Build the documentation and upload the static HTML files as an artifact. + build: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + - name: Install uv + uses: astral-sh/setup-uv@v3 + with: + version: "0.5.1" + enable-cache: true + cache-dependency-glob: "py-denormalized/uv.lock" + + - name: "Set up Python" + uses: actions/setup-python@v5 + with: + python-version-file: "py-denormalized/pyproject.toml" + + - name: Install the project + working-directory: ./py-denormalized + run: uv sync --no-dev --group docs --extra feast + + - name: Build the docs + working-directory: ./py-denormalized + run: | + source .venv/bin/activate + pdoc -t pdocs/ python/denormalized/ -o pdocs/_build + + - uses: actions/upload-pages-artifact@v3 + with: + path: py-denormalized/pdocs/_build + + # Deploy the artifact to GitHub pages. + # This is a separate job so that only actions/deploy-pages has the necessary permissions. + deploy: + if: github.event_name == 'push' && github.ref == 'refs/heads/main' + + needs: build + runs-on: ubuntu-latest + permissions: + pages: write + id-token: write + environment: + name: github-pages + url: ${{ steps.deployment.outputs.page_url }} + steps: + - id: deployment + uses: actions/deploy-pages@v4 diff --git a/py-denormalized/.gitignore b/py-denormalized/.gitignore index 9d2a03d..05a3f91 100644 --- a/py-denormalized/.gitignore +++ b/py-denormalized/.gitignore @@ -61,6 +61,7 @@ coverage.xml # Sphinx documentation docs/_build/ +pdocs/_build/ # PyCharm .idea/ diff --git a/py-denormalized/README.md b/py-denormalized/README.md index 886273a..a5dfe00 100644 --- a/py-denormalized/README.md +++ b/py-denormalized/README.md @@ -1,5 +1,4 @@ -denormalized-python -=== +## Denormalized Python Python bindings for [denormalized](https://github.com/probably-nothing-labs/denormalized) @@ -13,15 +12,15 @@ Denormalized is a single node stream processing engine written in Rust. This dir This script will connect to the kafka instance running in docker and aggregate the metrics in realtime. -There are several other examples in the [examples/ folder](python/examples/) that demonstrate other capabilities including stream joins and UDAFs. +There are several other examples in the [examples folder](python/examples/) that demonstrate other capabilities including stream joins and UDAFs. ## Development Make sure you're in the `py-denormalized/` directory. -We currently use [rye](https://rye.astral.sh/) to manage python dependencies. -`rye sync` to create/update the virtual environment +We use [uv](https://docs.astral.sh/uv/) to manage python dependencies. +`uv sync` to create/update the virtual environment We use [maturin](https://www.maturin.rs/) for developing and building: - `maturin develop` - build and install the python bindings into the current venv diff --git a/py-denormalized/pdocs/module.html.jinja2 b/py-denormalized/pdocs/module.html.jinja2 new file mode 100644 index 0000000..2dc01bc --- /dev/null +++ b/py-denormalized/pdocs/module.html.jinja2 @@ -0,0 +1,7 @@ +{% extends "default/module.html.jinja2" %} + +{% block nav_title %} + + + +{% endblock %} diff --git a/py-denormalized/pyproject.toml b/py-denormalized/pyproject.toml index c7adff2..b8fb1af 100644 --- a/py-denormalized/pyproject.toml +++ b/py-denormalized/pyproject.toml @@ -8,28 +8,34 @@ requires-python = ">=3.12" classifiers = [] dynamic = ["version"] # Version specified in py-denormalized/Cargo.toml description = "Embeddable stream processing engine" -dependencies = ["pyarrow>=17.0.0", "datafusion>=40.1.0"] +dependencies = [ + "pyarrow>=17.0.0", + "datafusion>=40.1.0", +] [project.optional-dependencies] -tests = ["pytest"] feast = ["feast"] -dev = [] - -[tool.maturin] -python-source = "python" -features = ["pyo3/extension-module"] -module-name = "denormalized._d_internal" -[tool.rye] -dev-dependencies = [ - "pip>=24.2", +[dependency-groups] +dev = [ + "pdoc>=15.0.0", "ipython>=8.26.0", "pytest>=8.3.2", "maturin>=1.7.4", "pyarrow-stubs>=17.11", "pandas>=2.2.3", "jupyterlab>=4.3.0", + "pdoc>=15.0.0", + "pip>=24.3.1", ] +docs = [ + "pdoc>=15.0.0", +] + +[tool.maturin] +python-source = "python" +features = ["pyo3/extension-module"] +module-name = "denormalized._d_internal" # Enable docstring linting using the google style guide [tool.ruff.lint] @@ -46,3 +52,4 @@ max-doc-length = 88 include = ["python"] exclude = ["src"] typeCheckingMode = "standard" +reportMissingImports = false diff --git a/py-denormalized/python/denormalized/__init__.py b/py-denormalized/python/denormalized/__init__.py index f9b0727..409c791 100644 --- a/py-denormalized/python/denormalized/__init__.py +++ b/py-denormalized/python/denormalized/__init__.py @@ -1,11 +1,30 @@ +""" +.. include:: ../../README.md + :start-line: 1 + :end-before: Development +""" + from .context import Context from .data_stream import DataStream +from .datafusion import col, column, lit, literal, udf, udaf +from .datafusion.expr import Expr +from .datafusion import functions as Functions __all__ = [ "Context", "DataStream", + "col", + "column", + "Expr", + "Functions", + "lit", + "literal", + "udaf", + "udf", ] +__docformat__ = "google" + try: from .feast_data_stream import FeastDataStream diff --git a/py-denormalized/python/denormalized/context.py b/py-denormalized/python/denormalized/context.py index e3f7c84..202b292 100644 --- a/py-denormalized/python/denormalized/context.py +++ b/py-denormalized/python/denormalized/context.py @@ -1,19 +1,35 @@ from denormalized._d_internal import PyContext - from .data_stream import DataStream class Context: - """Context.""" + """A context manager for handling data stream operations. + + This class provides an interface for creating and managing data streams, + particularly for working with Kafka topics and stream processing. + + Attributes: + ctx: Internal PyContext instance managing Rust-side operations + """ def __init__(self) -> None: - """__init__.""" + """Initialize a new Context instance.""" self.ctx = PyContext() def __repr__(self): + """Return a string representation of the Context object. + + Returns: + str: A detailed string representation of the context + """ return self.ctx.__repr__() def __str__(self): + """Return a readable string description of the Context object. + + Returns: + str: A human-readable string description + """ return self.ctx.__str__() def from_topic( @@ -24,7 +40,22 @@ def from_topic( timestamp_column: str, group_id: str = "default_group", ) -> DataStream: - """Create a new context from a topic.""" + """Create a new DataStream from a Kafka topic. + + Args: + topic: Name of the Kafka topic to consume from + sample_json: Sample JSON string representing the expected message format + bootstrap_servers: Comma-separated list of Kafka broker addresses + timestamp_column: Column name containing event timestamps + group_id: Kafka consumer group ID (defaults to "default_group") + + Returns: + DataStream: A new DataStream instance configured for the specified topic + + Raises: + ValueError: If the topic name is empty or invalid + ConnectionError: If unable to connect to Kafka brokers + """ py_ds = self.ctx.from_topic( topic, sample_json, @@ -33,5 +64,4 @@ def from_topic( group_id, ) ds = DataStream(py_ds) - return ds diff --git a/py-denormalized/python/denormalized/data_stream.py b/py-denormalized/python/denormalized/data_stream.py index e3790e0..2e228b4 100644 --- a/py-denormalized/python/denormalized/data_stream.py +++ b/py-denormalized/python/denormalized/data_stream.py @@ -7,13 +7,21 @@ class DataStream: - """Represents a stream of data that can be manipulated using various operations.""" + """Represents a stream of data that can be manipulated using various operations. + + This class provides a high-level interface for stream processing operations, including + filtering, joining, windowing, and sinking data to various destinations. It wraps + a Rust-implemented PyDataStream object. + + Attributes: + ds (PyDataStream): The underlying Rust-side DataStream implementation + """ def __init__(self, ds: PyDataStream) -> None: """Initialize a new DataStream object. Args: - ds (PyDataStream): The underlying PyDataStream object. + ds: The underlying PyDataStream object from the Rust implementation """ self.ds = ds @@ -21,7 +29,7 @@ def __repr__(self): """Return a string representation of the DataStream object. Returns: - str: A string representation of the DataStream. + str: A string representation of the DataStream """ return self.ds.__repr__() @@ -29,7 +37,7 @@ def __str__(self): """Return a string description of the DataStream object. Returns: - str: A string description of the DataStream. + str: A human-readable description of the DataStream """ return self.ds.__str__() @@ -37,7 +45,7 @@ def schema(self) -> pa.Schema: """Get the schema of the DataStream. Returns: - pa.Schema: The PyArrow schema of the DataStream. + pa.Schema: The PyArrow schema describing the structure of the data """ return self.ds.schema() @@ -45,10 +53,13 @@ def select(self, expr_list: list[Expr]) -> "DataStream": """Select specific columns or expressions from the DataStream. Args: - expr_list (list[Expr]): A list of expressions to select. + expr_list: List of expressions defining the columns or computations to select Returns: - DataStream: A new DataStream with the selected columns/expressions. + DataStream: A new DataStream containing only the selected expressions + + Example: + >>> ds.select([col("name"), col("age") + 1]) """ return DataStream(self.ds.select(to_internal_exprs(expr_list))) @@ -56,10 +67,13 @@ def filter(self, predicate: Expr) -> "DataStream": """Filter the DataStream based on a predicate. Args: - predicate (Expr): The filter predicate. + predicate: Boolean expression used to filter rows Returns: - DataStream: A new DataStream with the filter applied. + DataStream: A new DataStream containing only rows that satisfy the predicate + + Example: + >>> ds.filter(col("age") > 18) """ return DataStream(self.ds.filter(to_internal_expr(predicate))) @@ -67,16 +81,26 @@ def with_column(self, name: str, predicate: Expr) -> "DataStream": """Add a new column to the DataStream. Args: - name (str): The name of the new column. - predicate (Expr): The expression that defines the column's values. + name: Name of the new column + predicate: Expression defining the values for the new column Returns: - DataStream: A new DataStream with the additional column. + DataStream: A new DataStream with the additional column + + Example: + >>> ds.with_column("adult", col("age") >= 18) """ return DataStream(self.ds.with_column(name, to_internal_expr(predicate))) def drop_columns(self, columns: list[str]) -> "DataStream": - """Drops columns from the DataStream.""" + """Drops specified columns from the DataStream. + + Args: + columns: List of column names to remove + + Returns: + DataStream: A new DataStream without the specified columns + """ return DataStream(self.ds.drop_columns(columns)) def join_on( @@ -85,12 +109,15 @@ def join_on( """Join this DataStream with another one based on join expressions. Args: - right (DataStream): The right DataStream to join with. - join_type (str): The type of join to perform. - on_exprs (list[Expr]): The expressions to join on. + right: The right DataStream to join with + join_type: Type of join ('inner', 'left', 'right', 'full') + on_exprs: List of expressions defining the join conditions Returns: - DataStream: A new DataStream resulting from the join operation. + DataStream: A new DataStream resulting from the join operation + + Example: + >>> left.join_on(right, "inner", [col("id") == col("right.id")]) """ return DataStream(self.ds.join_on(right.ds, join_type, on_exprs)) @@ -105,14 +132,17 @@ def join( """Join this DataStream with another one based on column names. Args: - right (DataStream): The right DataStream to join with. - join_type (str): The type of join to perform. - left_cols (list[str]): The columns from the left DataStream to join on. - right_cols (list[str]): The columns from the right DataStream to join on. - filter (Expr, optional): An additional filter to apply to the join. + right: The right DataStream to join with + join_type: Type of join ('inner', 'left', 'right', 'full') + left_cols: Column names from the left DataStream to join on + right_cols: Column names from the right DataStream to join on + filter: Optional additional join filter expression Returns: - DataStream: A new DataStream resulting from the join operation. + DataStream: A new DataStream resulting from the join operation + + Example: + >>> left.join(right, "inner", ["id"], ["right_id"]) """ return DataStream( self.ds.join(right.ds, join_type, left_cols, right_cols, filter) @@ -128,14 +158,16 @@ def window( """Apply a windowing operation to the DataStream. Args: - group_exprs (list[Expr]): The expressions to group by. - aggr_exprs (list[Expr]): The aggregation expressions to apply. - window_length_millis (int): The length of the window in milliseconds. - slide_millis (int, optional): The slide interval of the window in - milliseconds. + group_exprs: List of expressions to group by + aggr_exprs: List of aggregation expressions to apply + window_length_millis: Length of the window in milliseconds + slide_millis: Optional slide interval in milliseconds (defaults to window_length) Returns: - DataStream: A new DataStream with the windowing operation applied. + DataStream: A new DataStream with the windowing operation applied + + Example: + >>> ds.window([col("user_id")], [sum(col("value"))], 60000) # 1-minute window """ return DataStream( self.ds.window( @@ -147,30 +179,30 @@ def window( ) def print_stream(self) -> None: - """Print the contents of the DataStream.""" + """Print the contents of the DataStream to stdout.""" self.ds.print_stream() def print_schema(self) -> "DataStream": - """Print the schema of the DataStream. + """Print the schema of the DataStream to stdout. Returns: - DataStream: This DataStream object for method chaining. + DataStream: Self for method chaining """ return DataStream(self.ds.print_schema()) def print_plan(self) -> "DataStream": - """Print the execution plan of the DataStream. + """Print the logical execution plan of the DataStream to stdout. Returns: - DataStream: This DataStream object for method chaining. + DataStream: Self for method chaining """ return DataStream(self.ds.print_plan()) def print_physical_plan(self) -> "DataStream": - """Print the physical execution plan of the DataStream. + """Print the physical execution plan of the DataStream to stdout. Returns: - DataStream: This DataStream object for method chaining. + DataStream: Self for method chaining """ return DataStream(self.ds.print_physical_plan()) @@ -178,11 +210,21 @@ def sink_kafka(self, bootstrap_servers: str, topic: str) -> None: """Sink the DataStream to a Kafka topic. Args: - bootstrap_servers (str): The Kafka bootstrap servers. - topic (str): The Kafka topic to sink the data to. + bootstrap_servers: Comma-separated list of Kafka broker addresses + topic: Name of the Kafka topic to write to + + Raises: + ConnectionError: If unable to connect to Kafka brokers """ self.ds.sink_kafka(bootstrap_servers, topic) def sink(self, func: Callable[[pa.RecordBatch], None]) -> None: - """Sink the DataStream to a Python function.""" + """Sink the DataStream to a Python callback function. + + Args: + func: Callback function that receives PyArrow RecordBatches + + Example: + >>> ds.sink(lambda batch: print(f"Received batch with {len(batch)} rows")) + """ self.ds.sink_python(func) diff --git a/py-denormalized/python/denormalized/feast_data_stream.py b/py-denormalized/python/denormalized/feast_data_stream.py index c4124d4..395f63f 100644 --- a/py-denormalized/python/denormalized/feast_data_stream.py +++ b/py-denormalized/python/denormalized/feast_data_stream.py @@ -14,9 +14,23 @@ class FeastDataStreamMeta(type): - """Metaclass that modifies DataStream return types to FeastDataStream.""" + """Metaclass that modifies DataStream return types to FeastDataStream. + + This metaclass wraps methods from DataStream that return DataStream types + to instead return FeastDataStream types. + """ def __new__(cls, name: str, bases: tuple, attrs: dict) -> Any: + """Create a new class with modified return types. + + Args: + name: Name of the class being created + bases: Tuple of base classes + attrs: Dictionary of class attributes + + Returns: + Any: New class with modified method return types + """ # Get all methods from DataStream that return DataStream datastream_methods = inspect.getmembers( DataStream, @@ -24,7 +38,6 @@ def __new__(cls, name: str, bases: tuple, attrs: dict) -> Any: inspect.isfunction(x) and get_type_hints(x).get("return") == DataStream ), ) - # For each method that returns DataStream, create a wrapper that returns FeastDataStream for method_name, method in datastream_methods: if method_name not in attrs: # Only wrap if not already defined @@ -45,12 +58,17 @@ def wrapper(self, *args, **kwargs): return wrapper attrs[method_name] = create_wrapper(method_name) - return super().__new__(cls, name, bases, attrs) class FeastDataStream(DataStream, metaclass=FeastDataStreamMeta): - """A DataStream subclass with additional Feast-specific functionality.""" + """A DataStream subclass with additional Feast-specific functionality. + + This class extends DataStream to provide integration with Feast feature stores + and related functionality. + + You must install with the extra 'feast': `pip install denormalized[feast]` + """ def __init__(self, stream: Union[PyDataStream, DataStream]) -> None: """Initialize a FeastDataStream from either a PyDataStream or DataStream. @@ -64,7 +82,11 @@ def __init__(self, stream: Union[PyDataStream, DataStream]) -> None: super().__init__(stream) def get_feast_schema(self) -> list[Field]: - """Get the Feast schema for this DataStream.""" + """Get the Feast schema for this DataStream. + + Returns: + list[Field]: List of Feast Field objects representing the schema + """ return [ Field( name=s.name, dtype=from_value_type(pa_to_feast_value_type(str(s.type))) @@ -75,11 +97,18 @@ def get_feast_schema(self) -> list[Field]: def write_feast_feature( self, feature_store: FeatureStore, source_name: str ) -> None: - """Write the DataStream to a Feast feature store.""" + """Write the DataStream to a Feast feature store. + + Args: + feature_store: The target Feast feature store + source_name: Name of the feature source in Feast + + Note: + Any exceptions during the push operation will be printed but not raised. + """ def _sink_to_feast(rb: pa.RecordBatch): df = rb.to_pandas() - try: feature_store.push(source_name, df, to=PushMode.ONLINE) except Exception as e: diff --git a/py-denormalized/python/denormalized/utils.py b/py-denormalized/python/denormalized/utils.py index fb1aeb5..faadba9 100644 --- a/py-denormalized/python/denormalized/utils.py +++ b/py-denormalized/python/denormalized/utils.py @@ -3,10 +3,26 @@ def to_internal_expr(expr: Expr | str) -> internal_exprs: - """Convert a single Expr or string to internal exprs.""" + """Convert a single Expr or string to internal expression. + + Args: + expr (Union[Expr, str]): The expression to convert, either an Expr object + or a string column name. + + Returns: + internal_exprs: The converted internal expression. + """ return Expr.column(expr).expr if isinstance(expr, str) else expr.expr def to_internal_exprs(exprs: list[Expr] | list[str]) -> list[internal_exprs]: - """Convert a list of Expr or string to a list of internal exprs.""" + """Convert a list of expressions or strings to internal expressions. + + Args: + exprs (Union[list[Expr], list[str]]): List of expressions to convert, + can be either Expr objects or string column names. + + Returns: + list[internal_exprs]: List of converted internal expressions. + """ return [to_internal_expr(arg) for arg in exprs] diff --git a/py-denormalized/python/examples/stream_aggregate.py b/py-denormalized/python/examples/stream_aggregate.py index 6a88982..14fe5e1 100644 --- a/py-denormalized/python/examples/stream_aggregate.py +++ b/py-denormalized/python/examples/stream_aggregate.py @@ -1,6 +1,6 @@ """stream_aggregate example. -docker build -t emgeee/kafka_emit_measurements:latest . +docker run --rm -p 9092:9092 emgeee/kafka_emit_measurements:latest """ import json diff --git a/py-denormalized/requirements-dev.lock b/py-denormalized/requirements-dev.lock deleted file mode 100644 index 135f630..0000000 --- a/py-denormalized/requirements-dev.lock +++ /dev/null @@ -1,278 +0,0 @@ -# generated by rye -# use `rye lock` or `rye sync` to update this lockfile -# -# last locked with the following flags: -# pre: false -# features: ["dev"] -# all-features: false -# with-sources: false -# generate-hashes: false -# universal: false - --e file:. -anyio==4.6.2.post1 - # via httpx - # via jupyter-server -appnope==0.1.4 - # via ipykernel -argon2-cffi==23.1.0 - # via jupyter-server -argon2-cffi-bindings==21.2.0 - # via argon2-cffi -arrow==1.3.0 - # via isoduration -asttokens==2.4.1 - # via stack-data -async-lru==2.0.4 - # via jupyterlab -attrs==24.2.0 - # via jsonschema - # via referencing -babel==2.16.0 - # via jupyterlab-server -beautifulsoup4==4.12.3 - # via nbconvert -bleach==6.2.0 - # via nbconvert -certifi==2024.8.30 - # via httpcore - # via httpx - # via requests -cffi==1.17.1 - # via argon2-cffi-bindings -charset-normalizer==3.4.0 - # via requests -comm==0.2.2 - # via ipykernel -datafusion==40.1.0 - # via denormalized -debugpy==1.8.7 - # via ipykernel -decorator==5.1.1 - # via ipython -defusedxml==0.7.1 - # via nbconvert -executing==2.0.1 - # via stack-data -fastjsonschema==2.20.0 - # via nbformat -fqdn==1.5.1 - # via jsonschema -h11==0.14.0 - # via httpcore -httpcore==1.0.6 - # via httpx -httpx==0.27.2 - # via jupyterlab -idna==3.10 - # via anyio - # via 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-jupyter-server-terminals==0.5.3 - # via jupyter-server -jupyterlab==4.3.0 -jupyterlab-pygments==0.3.0 - # via nbconvert -jupyterlab-server==2.27.3 - # via jupyterlab -markupsafe==3.0.2 - # via jinja2 - # via nbconvert -matplotlib-inline==0.1.7 - # via ipykernel - # via ipython -mistune==3.0.2 - # via nbconvert -nbclient==0.10.0 - # via nbconvert -nbconvert==7.16.4 - # via jupyter-server -nbformat==5.10.4 - # via jupyter-server - # via nbclient - # via nbconvert -nest-asyncio==1.6.0 - # via ipykernel -notebook-shim==0.2.4 - # via jupyterlab -maturin==1.7.4 -numpy==2.1.0 - # via pandas - # via pyarrow -overrides==7.7.0 - # via jupyter-server -packaging==24.1 - # via ipykernel - # via jupyter-server - # via jupyterlab - # via jupyterlab-server - # via nbconvert - # via pytest -pandas==2.2.3 -pandocfilters==1.5.1 - # via nbconvert -parso==0.8.4 - # via jedi -pexpect==4.9.0 - # via ipython -pip==24.2 -platformdirs==4.3.6 - # via jupyter-core -pluggy==1.5.0 - # via pytest 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