README.md

gold-ecosystems-linkml

A script to generate a LinkML model describing valid GOLD Ecosystem Classification paths.

Setup

Install project dependencies through Poetry:

poetry install

Running

The pipeline of downloading the GOLD Ecosystem Classification specification spreadsheet and transforming it into a LinkML model is automated through the Makefile target linkml. By default, this sends the results to stdout; redirect it as necessary.

make linkml > gold.yaml

Testing

To run unit tests:

make test