NAMESPACE

useDynLib(HCfused, .registration=TRUE)
importFrom(Rcpp, evalCpp)
exportPattern("^[[:alpha:]]+")

#import(methods)
#import(cluster)
#import(fastcluster)
#import(doParallel)
#import(foreach)

importFrom("stats", "dnorm", "rgamma", "rnorm", "runif", "sd")
importFrom("utils", "read.table", "write.table")

export(calc.BINARY)
export(calc.SIL)
export(combine_clusters)


export(HC_fused_get_contributions)
export(HC_fused_calc_distances)

export(HC_fused)
export(HC_fused_subtyping)
export(HC_fused_subtyping_ens)
export(HC_fused_subtyping_ens2)
export(HC_fused_subtyping_ga)
export(HC_fused_subtyping_ga2)
export(HC_fused_subtyping_kNN)
export(HC_fused_subtyping_kNN_sub)
export(HC_fused_calc_NETWORK)
export(HC_fused_kNNGraph)
export(HC_fused_kNNGraph2)

# general usage exports
export(HCmv)
export(association)
export(HCfuse)
export(Parea)
#export(DeepParea)