mob_suite

Jun 4, 2024

6cd3f98 · Jun 4, 2024

Name	Name	Last commit message	Last commit date
parent directory ..
blast	blast	fixed variety of bugs	May 26, 2022
classes	classes	fixed variety of bugs	May 26, 2022
conda	conda	towards relase 3.1.9 and issue fixes #160 and #163	Jun 3, 2024
databases	databases	corrected distance not being set for triaged contigs	Jul 15, 2020
docker	docker	update Dockerfile	Sep 20, 2022
example	example	Fixed issue #152 - empty biomarker report, added unit test, updated r…	Nov 4, 2023
singularity	singularity	Improved mob_init script solving concurrent call condition from multi…	Oct 31, 2019
tests	tests	towards relase 3.1.9 and issue fixes #160 and #163	Jun 3, 2024
wrappers	wrappers	removed need to read entire fasta into memory	May 30, 2022
__init__.py	__init__.py	bug fixes and feature adds	Apr 4, 2018
config.json	config.json	Added new DB download mirror. Added biomarker vs mobtyper report test…	Dec 11, 2023
constants.py	constants.py	release v. 3.1.1 bug fixes and numpy version restriction	Jan 25, 2023
mob_cluster.py	mob_cluster.py	Add missing args to initETE3Database	Jun 20, 2023
mob_init.py	mob_init.py	towards relase 3.1.9 and issue fixes #160 and #163	Jun 3, 2024
mob_recon.py	mob_recon.py	towards relase 3.1.9 and issue fixes #160 and #163	Jun 3, 2024
mob_typer.py	mob_typer.py	Added new DB download mirror. Added biomarker vs mobtyper report test…	Dec 11, 2023
utils.py	utils.py	towards relase 3.1.9 and issue fixes #160 and #163	Jun 3, 2024
version.py	version.py	Update version.py to 3.1.9	Jun 4, 2024

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