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inphac-nml/mob-suite (press backspace or delete to remove)Hello!
While running mob_recon, there was a problem that seems to be related to this unmerged PR in ete3.
- Log:
Not 93_d42b257742c09745af06b059c354537d_circular=false_3834 to cluster AA002 assigned ...
omegatro
- 1
- Opened on Feb 21
- #178
Hello,
Firstly, I couldn t install mob-suite using conda in a new clean environment, because it was stalling for hours at the
stage of solving env. So I decided to install using mamba ( mamba install ...
valery-shap
- Opened on Jan 22
- #177
Hi, I m trying to run mob typer using thos snakemake rule:
rule run_mobtyper:
conda:
envs/mob_suite.yaml
input:
os.path.join(output_dir, results , plasmids_concat.txt )
...
itaysol
- 1
- Opened on Jan 12
- #176
Thank you so much for the tool, it’s really useful! I’ve been working with plasmids and their typing through relaxases
for many years. Right now, I’m working with high-quality Nanopore assemblies and I’m ...
mdtorohernando
- Opened on Oct 28, 2024
- #175
When running mob-recon with a custom plasmid database, I often get no secondary cluster reported for contigs that are
assigned to a primary cluster. In the database (constructed using ~50K plasmids), all ...
cizydorczyk
- Opened on Oct 24, 2024
- #174
Hello,
Recently I run mob_typer with all the tests datasets provided in the Tests/ folder but I could not detect any hit.
I set up a conda environment using conda create -n mob_suite mob_suite pandas==1.0.0 ...
pdy1084
- 1
- Opened on Oct 23, 2024
- #173
Hi there,
I have made multiple attempts to use mob-suite and keep running into the same error (stated below). It seems the
programme does not call Bio.SeqUtils correctly and therefore can t load the gc_fraction ...
KeCo26
- 1
- Opened on Oct 8, 2024
- #172
Hi there, I ran a run on the same plasmids using version 3.1.9, which I had previously run using version 3.1.5. I ran
this on about a thousand plasmids. However, I have gotten several hundred plasmids ...
eri-lim
- 3
- Opened on Aug 30, 2024
- #171
First, thanks so much for this fantastic tool
I was analyzing a collection of plasmids from pseudomonads, and came across predictions of relaxases that were
unexpected, because I got a prediction with ...
Phytobacteriology-UPNA
- 3
- Opened on Aug 5, 2024
- #170
Hello, I m a newbie in programming and need help installing MOBsuite in my conda environment. I ve opened a new
environment to install the specific requirements. Here is what I installed before installing ...
zeineppu97
- 10
- Opened on Jul 8, 2024
- #169
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