From 8ac886686c3b481e6fe20d622d128687087cf4f5 Mon Sep 17 00:00:00 2001 From: Pavel Zhelnov Date: Thu, 24 Nov 2022 14:51:08 -0500 Subject: [PATCH] Update the RSSB query with the EDAT fix See previous commits about the EDAT fix. --- README.md | 449 +------------------- zheln/Replicated_Systematic_Subset_Query.md | 8 +- 2 files changed, 6 insertions(+), 451 deletions(-) diff --git a/README.md b/README.md index f6de63a0..4a67dc3e 100644 --- a/README.md +++ b/README.md @@ -296,454 +296,7 @@ Each step is also marked with an appraisal status icon: ### Replicated Version -* Up-To-Date by Sep 9, 2020 -* Run on Sep 12, 2020, to Retrieve 472,252 Records - -> **How to use?** -> -> * Replace all the upper limit dates with the date needed using any text editor. -> * If you need to filter just the records indexed _on_ that date (instead of all the records indexed _by_ that date), then add the following fragment to the query (either before the first or after the last parenthesis): `(2020/09/09:2020/09/09[crdt] OR 2020/09/09:2020/09/09[dcom] OR 2020/09/09:2020/09/09[mhda])`, where the date is your required date (should be the same as the upper limit date). -> * If everything done correctly & the query itself still works, you will get a consistent set of records each time on whatever date you run the query. **Notice 2: Replicated Systematic Review Subset appears to have stopped producing replicable record sets on PubMed’s side as of June 2022.** I initiated an [investigation](zheln/Replicated_Systematic_Subset_Query.md) to find out more. - -``` -( - ( - ( - ( - ( - ( - "systematic review"[ti] OR "systematic literature review"[ti] OR "systematic scoping review"[ti] OR "systematic narrative review"[ti] OR "systematic qualitative review"[ti] OR "systematic evidence review"[ti] OR "systematic quantitative review"[ti] OR "systematic meta review"[ti] OR "systematic critical review"[ti] OR "systematic mixed studies review"[ti] OR "systematic mapping review"[ti] OR "systematic cochrane review"[ti] OR "systematic search and review"[ti] OR "systematic integrative review"[ti] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - NOT - ( - "comment"[pt] - AND - 1865/01/01:2020/09/09[dcom] - ) - NOT - ( - ( - "protocol"[ti] OR "protocols"[ti] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - ) - NOT - ( - "medline"[sb] - AND - 1865/01/01:2020/09/09[dcom] - ) - ) - OR - ( - ( - "cochrane database syst rev"[ta] - AND - 1865/01/01:2020/09/09[crdt] - ) - AND - ( - "review"[pt] - AND - 1865/01/01:2020/09/09[dcom] - ) - ) - OR - ( - "systematic review"[pt] - AND - 1865/01/01:2020/09/09[dcom] - ) - ) - OR - ( - ( - ( - "systematic review"[ti] - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - "meta-analysis"[pt] - AND - 1865/01/01:2020/09/09[dcom] - ) - OR - ( - ( - "meta analysis"[ti] OR "systematic literature review"[ti] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - "this systematic review"[tw] OR "pooling project"[tw] - ) - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - ( - "this systematic review"[tiab] OR "pooling project"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - "systematic review"[tiab] - AND - 1865/01/01:2020/09/09[crdt] - ) - AND - ( - "review"[pt] - AND - 1865/01/01:2020/09/09[dcom] - ) - ) - OR - ( - ( - "meta synthesis"[ti] OR "meta analy*"[ti] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - "integrative review"[tw] OR "integrative research review"[tw] OR "rapid review"[tw] OR "umbrella review"[tw] - ) - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - ( - "integrative review"[tiab] OR "integrative research review"[tiab] OR "rapid review"[tiab] OR "umbrella review"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - "consensus development conference"[pt] OR "practice guideline"[pt] - ) - AND - 1865/01/01:2020/09/09[dcom] - ) - OR - ( - ( - "drug class reviews"[ti] OR "cochrane database syst rev"[ta] OR "acp journal club"[ta] OR "health technol assess"[ta] OR "evid rep technol assess summ"[ta] OR "jbi database system rev implement rep"[ta] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - "clinical guideline"[tw] - AND - "management"[tw] - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - "clinical guideline"[tiab] - AND - "management"[tiab] - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - ( - "evidence based"[ti] - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - "evidence-based medicine"[mh] - AND - 1865/01/01:2020/09/09[mhda] - ) - OR - ( - ( - "best practice*"[ti] OR "evidence synthesis"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - ) - AND - ( - ( - ( - "review"[pt] OR "evaluation study"[pt] OR "validation study"[pt] OR "guideline"[pt] OR "pmcbook"[all] - ) - AND - 1865/01/01:2020/09/09[dcom] - ) - OR - ( - ( - "diseases category"[mh] OR "behavior and behavior mechanisms"[mh] OR "therapeutics"[mh] - ) - AND - 1865/01/01:2020/09/09[mhda] - ) - ) - ) - OR - ( - ( - ( - ( - "systematic"[tw] OR "systematically"[tw] OR "study selection"[tw] - OR - ( - ( - "predetermined"[tw] OR "inclusion"[tw] - ) - AND - "criteri*"[tw] - ) - OR - "exclusion criteri*"[tw] OR "main outcome measures"[tw] OR "standard of care"[tw] OR "standards of care"[tw] - ) - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - ( - "systematic"[tiab] OR "systematically"[tiab] OR "study selection"[tiab] - OR - ( - ( - "predetermined"[tiab] OR "inclusion"[tiab] - ) - AND - "criteri*"[tiab] - ) - OR - "exclusion criteri*"[tiab] OR "main outcome measures"[tiab] OR "standard of care"[tiab] OR "standards of care"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - "critical"[tiab] - AND - 1865/01/01:2020/09/09[crdt] - ) - ) - AND - ( - ( - ( - "survey"[tiab] OR "surveys"[tiab] OR "review"[tiab] OR "reviews"[tiab] OR "analysis"[ti] OR "critique"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - "overview*"[tw] OR "search*"[tw] OR "handsearch"[tw] OR "appraisal"[tw] - ) - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - ( - "overview*"[tiab] OR "search*"[tiab] OR "handsearch"[tiab] OR "appraisal"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - ( - "reduction"[tw] - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - "reduction"[tiab] - AND - 1865/01/01:2020/09/09[crdt] - ) - ) - AND - ( - ( - "risk"[mh] - AND - 1865/01/01:2020/09/09[mhda] - ) - OR - ( - ( - "risk"[tw] - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - "risk"[tiab] - AND - 1865/01/01:2020/09/09[crdt] - ) - ) - ) - AND - ( - ( - ( - "death"[mh] OR "recurrence"[mh] - ) - AND - 1865/01/01:2020/09/09[mhda] - ) - OR - ( - ( - "death"[all] OR "recurrence"[all] - ) - AND - 1865/01/01:2020/09/09[dcom] - ) - ) - ) - ) - AND - ( - ( - ( - "literature"[tiab] OR "articles"[tiab] OR "publications"[tiab] OR "publication"[tiab] OR "bibliography"[tiab] OR "bibliographies"[tiab] OR "published"[tiab] OR "database"[tiab] OR "internet"[tiab] OR "textbooks"[tiab] OR "trials"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - ( - "pooled data"[tw] OR "unpublished"[tw] OR "citation"[tw] OR "citations"[tw] OR "references"[tw] OR "scales"[tw] OR "papers"[tw] OR "datasets"[tw] OR "meta analy*"[tw] - ) - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - ( - "pooled data"[tiab] OR "unpublished"[tiab] OR "citation"[tiab] OR "citations"[tiab] OR "references"[tiab] OR "scales"[tiab] OR "papers"[tiab] OR "datasets"[tiab] OR "meta analy*"[tiab] - ) - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - "clinical"[tiab] - AND - "studies"[tiab] - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - "treatment outcome"[mh] - AND - 1865/01/01:2020/09/09[mhda] - ) - OR - ( - "treatment outcome"[tw] - AND - ( - 1865/01/01:2020/09/09[dcom] - OR - 1865/01/01:2020/09/09[mhda] - ) - ) - OR - ( - "treatment outcome"[tiab] - AND - 1865/01/01:2020/09/09[crdt] - ) - OR - ( - "pmcbook"[all] - AND - 1865/01/01:2020/09/09[dcom] - ) - ) - ) - ) - NOT - ( - ( - "letter"[pt] OR "newspaper article"[pt] - ) - AND - 1865/01/01:2020/09/09[dcom] - ) - ) -) -``` +Please see the [dedicated file](zheln/Replicated_Systematic_Subset_Query.md). ## Appendix: How to Compile Zheln Records? diff --git a/zheln/Replicated_Systematic_Subset_Query.md b/zheln/Replicated_Systematic_Subset_Query.md index 7d6b3161..8862ed9d 100644 --- a/zheln/Replicated_Systematic_Subset_Query.md +++ b/zheln/Replicated_Systematic_Subset_Query.md @@ -56,11 +56,13 @@ See a detailed account of development of the Replicated Systematic Review Subset ## Current Version +_With the [EDAT fix](#development-log) applied._ + **Usage Notes** * Intended to cover records from Oct 26, 2022, to Nov 5, 2022. -* Run on Nov 6, 2022, to retrieve 3,237 records. -* To change the date interval, one would need to replace all the upper limit dates with the latest date needed, and the lower limit dates from the final `(2022/10/26:2022/11/05[crdt] OR 2022/10/26:2022/11/05[dcom] OR 2022/10/26:2022/11/05[mhda])` fragment with the earliest date needed (not touching the `1865/01/01` fragments throughout the query, though), using any text editor. If one is to filter just the records indexed _on_ the date or _by_ the date, one needs to edit this final fragment accordingly. +* Run on Nov 24, 2022, to retrieve 3,228 records. +* To change the date interval, one would need to replace all the upper limit dates with the latest date needed, and the lower limit dates from the final `(2022/10/26:2022/11/05[crdt] OR 2022/10/26:2022/11/05[dcom] OR 2022/10/26:2022/11/05[mhda] OR 2022/10/26:2022/11/05[edat])` fragment with the earliest date needed (not touching the `1865/01/01` fragments throughout the query, though), using any text editor. If one is to filter just the records indexed _on_ the date or _by_ the date, one needs to edit this final fragment accordingly. ``` ( @@ -499,5 +501,5 @@ See a detailed account of development of the Replicated Systematic Review Subset 1865/01/01:2022/11/05[dcom] ) ) -) AND (2022/10/26:2022/11/05[crdt] OR 2022/10/26:2022/11/05[dcom] OR 2022/10/26:2022/11/05[mhda]) +) AND (2022/10/26:2022/11/05[crdt] OR 2022/10/26:2022/11/05[dcom] OR 2022/10/26:2022/11/05[mhda] OR 2022/10/26:2022/11/05[edat]) ```