diff --git a/.gitignore b/.gitignore
index 41f798e..37f2601 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,5 +1,4 @@
 ## ignore the following
 TODO_for_paper.org
 data/change_c_codes.sh
-data/subset_features_v*csv
 .Rhistory
diff --git a/README.md b/README.md
index 6dd48f8..02768c0 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,11 @@
 Code for manuscript:
 
-`O'Toole JM, Pavlidis E, Korotchikova I, Boylan GB, Stevenson NJ, Temporal evolution of
-quantitative EEG within 3 days of birth in early preterm infants, 2018, under review`
+
+O'Toole JM, Pavlidis E, Korotchikova I, Boylan GB, Stevenson NJ, Temporal evolution of
+quantitative EEG within 3 days of birth in early preterm infants, Scientific Reports,
+41227, [DOI: 10.1038/s41598-019-41227-9](https://doi.org/10.1038/s41598-019-41227-9)
+(2019)
+
 
 
 Please cite the above reference if using this code or data to generate new results. 
@@ -23,7 +27,6 @@ also available [on github](https://github.com/otoolej/burst_detector)). See
 [references](#references) [1,2] for more details on these.
 
 
-__*NB: feature set (as .csv file) will be included after publication.*__
 
 
 ## Require packages
diff --git a/data/coeffs_fixedEffects_MM_v1.csv b/data/coeffs_fixedEffects_MM_v1.csv
index f868d2d..9b1e3b0 100644
--- a/data/coeffs_fixedEffects_MM_v1.csv
+++ b/data/coeffs_fixedEffects_MM_v1.csv
@@ -1,35 +1,35 @@
- # feature, intercept, Ici1, Ici2, time, Tci1, Tci2, GA, Gci1, Gci2, time:GA, TGci1, TGci2 
-spectral_power..1.,-180.1,-1436.3, 952.6,1229.0,  655.5,1835.1,  18.4,  -22.3,  62.5, -38.7,  -60.0, -17.8
-spectral_power..2.,29.829,-30.06,85.2787,33.480,  7.13,58.0620,-0.359, -2.38, 1.8432,-1.032, -1.90,-0.0827
-spectral_power..3.,4.79,3.695,5.86,1.08,0.575,1.63,,,,,,
-spectral_power..4.,1.622,1.13,2.090,0.589,0.23,0.913,,,,,,
+# feature, intercept, Ici1, Ici2, time, Tci1, Tci2, GA, Gci1, Gci2, time:GA, TGci1, TGci2 
+spectral_power..1.,-180.1,-1457.4,1105.6,1229.0,  603.3,1833.7,  18.4,  -27.1,  64.1, -38.7,  -60.0, -16.1
+spectral_power..2.,29.822,-33.76,90.94,33.483,  9.45,59.88,-0.359, -2.60, 1.88,-1.032, -1.94,-0.16
+spectral_power..3.,4.79,3.743,5.77,1.08,0.574,1.65,,,,,,
+spectral_power..4.,1.622,1.122,2.119,0.589,0.235,0.959,,,,,,
 spectral_relative_power..1.,93.5,92.9,94,,,,,,,,,
-spectral_relative_power..2., 5.12, 4.507, 5.8287,-0.38,-0.709,-0.0537,,,,,,
-spectral_relative_power..3., 1.14669,-0.9815, 3.437,-1.71700,-3.3462,-0.188, 0.00728,-0.0734, 0.082, 0.05774, 0.0037, 0.115
-spectral_relative_power..4.,-0.6856,-1.3447,-0.0487,,,, 0.0407, 0.0181, 0.0648,,,
+spectral_relative_power..2., 5.12, 4.442, 5.7630,-0.38,-0.704,-0.0315,,,,,,
+spectral_relative_power..3., 1.14669,-1.14211, 3.5818,-1.71699,-3.44362,-0.1466, 0.00728,-0.07919, 0.0872, 0.05774, 0.00249, 0.1182
+spectral_relative_power..4.,-0.6856,-1.2993,-0.0947,,,, 0.0407, 0.0196, 0.0624,,,
 spectral_flatness..1.,0.269,0.26,0.278,,,,,,,,,
-spectral_flatness..2.,0.54401,0.38920,0.6831,0.00950,0.00329,0.0156,0.00695,0.00208,0.0125,,,
-spectral_flatness..3.,0.62048,0.55645,0.68533,0.00955,0.00273,0.01603,0.00723,0.00480,0.00949,,,
+spectral_flatness..2.,0.54401,0.40131,0.7055,0.00950,0.00351,0.0152,0.00695,0.00132,0.0122,,,
+spectral_flatness..3.,0.62048,0.55691,0.68516,0.00955,0.00281,0.01612,0.00723,0.00489,0.00947,,,
 spectral_flatness..4.,0.665,0.656,0.676,,,,,,,,,
-spectral_edge_frequency, 6.2846, 1.11000,12.0275,-3.6348,-7.12350,-0.3179,-0.0992,-0.30037, 0.0852, 0.1235, 0.00545, 0.2436
-FD,0.9775,0.81649,1.133,,,,0.0124,0.00688,0.018,,,
-amplitude_skew..1., 0.610522,-0.2937, 1.54206, 0.723368, 0.1407, 1.28159,-0.000956,-0.0332, 0.03255,-0.026347,-0.0460,-0.00609
-amplitude_skew..2., 0.6013, 0.4763, 0.71880,-0.0145,-0.0254,-0.00390,-0.0144,-0.0185,-0.00983,,,
-amplitude_skew..3., 0.15206, 0.12859, 0.17766,,,,-0.00423,-0.00511,-0.00341,,,
-amplitude_skew..4., 0.8910, 0.694, 1.088,,,,-0.0231,-0.030,-0.016,,,
-amplitude_kurtosis..1.,25.688,19.614,31.296,,,,-0.622,-0.818,-0.411,,,
-amplitude_kurtosis..2.,78.35,61.22,94.61,-2.52,-4.10,-1.01,-1.94,-2.53,-1.37,,,
-amplitude_kurtosis..3.,85.87,66.8,105.51,,,,-2.31,-3.0, -1.65,,,
-amplitude_kurtosis..4.,82.67,62.44,103.46,,,,-2.23,-2.99, -1.51,,,
-connectivity_coh_mean..1., 0.4481, 0.3140, 0.5807,,,,-0.0106,-0.0153,-0.0059,,,
-connectivity_coh_mean..2., 0.4209, 0.3275, 0.51374,,,,-0.0103,-0.0136,-0.00704,,,
-connectivity_coh_mean..3., 0.38125, 0.2755, 0.48207,,,,-0.00964,-0.0132,-0.00588,,,
-connectivity_coh_mean..4., 0.25549, 0.17111, 0.33142,,,,-0.00568,-0.00834,-0.00278,,,
-rEEG_median,23.72,20.17,27.57, 5.17, 3.17, 7.05,,,,,,
-rEEG_lower_margin,-7.513,-16.729,1.367, 1.189,  0.255,2.104, 0.578,  0.252,0.902,,,
-rEEG_upper_margin, 92.665,-147.61,336.51,175.866,  51.71,298.13,  0.978,  -7.74,  9.43, -5.901, -10.31, -1.54
-rEEG_asymmetry, 1.4456, 1.1805, 1.7330,-0.0372,-0.0593,-0.0157,-0.0267,-0.0363,-0.0171,,,
-IBI_length_max,34.813,22.92,47.131,-0.994,-1.92,-0.108,-0.807,-1.23,-0.393,,,
-IBI_length_median, 6.219, 3.764, 8.5497,,,,-0.116,-0.201,-0.0324,,,
-IBI_burst_prc,3.50,-34.800,41.80,5.77,  2.803, 8.77,2.26,  0.908, 3.59,,,
-IBI_burst_number,514.9,370.0,665.53,-26.9,-42.9,-10.73,-10.0,-15.3, -4.85,,,
+spectral_edge_frequency, 6.2866, 1.08161,11.9100,-3.6358,-7.09981,-0.2256,-0.0993,-0.29630, 0.0856, 0.1235, 0.00557, 0.2462
+FD,0.9775,0.82034,1.1373,,,,0.0124,0.00677,0.0178,,,
+amplitude_skew..1., 0.610531,-0.3586, 1.57228, 0.723401, 0.1558, 1.31125,-0.000957,-0.0358, 0.03391,-0.026349,-0.0467,-0.00674
+amplitude_skew..2., 0.6013, 0.4701, 0.72481,-0.0145,-0.0266,-0.00321,-0.0144,-0.0187,-0.00996,,,
+amplitude_skew..3., 0.15206, 0.12790, 0.17617,,,,-0.00423,-0.00507,-0.00339,,,
+amplitude_skew..4., 0.8910, 0.6857, 1.1050,,,,-0.0231,-0.0307,-0.0158,,,
+amplitude_kurtosis..1.,25.687,19.615,32.12,,,,-0.622,-0.851,-0.41,,,
+amplitude_kurtosis..2.,78.34,62.11,96.959,-2.52,-4.08,-0.998,-1.94,-2.61,-1.378,,,
+amplitude_kurtosis..3.,85.87,65.47,105.9,,,,-2.31,-3.02, -1.6,,,
+amplitude_kurtosis..4.,82.67,61.47,104.30,,,,-2.23,-3.01, -1.47,,,
+connectivity_coh_mean..1., 0.4481, 0.3133, 0.5747,,,,-0.0106,-0.0152,-0.0058,,,
+connectivity_coh_mean..2., 0.4209, 0.3355, 0.50647,,,,-0.0103,-0.0133,-0.00723,,,
+connectivity_coh_mean..3., 0.38125, 0.2713, 0.48090,,,,-0.00964,-0.0132,-0.00583,,,
+connectivity_coh_mean..4., 0.25549, 0.17544, 0.33723,,,,-0.00568,-0.00852,-0.00283,,,
+rEEG_median,23.72,20.37,27.19, 5.17, 3.36, 7.05,,,,,,
+rEEG_lower_margin,-7.513,-16.647,1.456, 1.189,  0.307,2.123, 0.578,  0.269,0.915,,,
+rEEG_upper_margin, 92.661,-166.38,352.15,175.870,  52.90,295.09,  0.979,  -8.15, 10.29, -5.901, -10.24, -1.47
+rEEG_asymmetry, 1.4457, 1.1376, 1.7084,-0.0372,-0.0587,-0.0158,-0.0267,-0.0360,-0.0159,,,
+IBI_length_max,34.813,23.31,46.9330,-0.994,-1.88,-0.0665,-0.807,-1.23,-0.3921,,,
+IBI_length_median, 6.219, 3.764, 8.5181,,,,-0.116,-0.198,-0.0281,,,
+IBI_burst_prc,3.50,-31.733,40.11,5.77,  2.894, 8.76,2.26,  0.918, 3.52,,,
+IBI_burst_number,514.9,365.1,666.25,-26.9,-42.9,-10.02,-10.0,-15.8, -4.66,,,
diff --git a/data/subset_features_v3.csv b/data/subset_features_v3.csv
new file mode 100644
index 0000000..bf34385
--- /dev/null
+++ b/data/subset_features_v3.csv
@@ -0,0 +1,97 @@
+baby_ID,GA,time,c_code,spectral_power..1.,spectral_power..2.,spectral_power..3.,spectral_power..4.,spectral_relative_power..1.,spectral_relative_power..2.,spectral_relative_power..3.,spectral_relative_power..4.,spectral_flatness..1.,spectral_flatness..2.,spectral_flatness..3.,spectral_flatness..4.,spectral_edge_frequency,FD,amplitude_skew..1.,amplitude_skew..2.,amplitude_skew..3.,amplitude_skew..4.,amplitude_kurtosis..1.,amplitude_kurtosis..2.,amplitude_kurtosis..3.,amplitude_kurtosis..4.,connectivity_coh_mean..1.,connectivity_coh_mean..2.,connectivity_coh_mean..3.,connectivity_coh_mean..4.,rEEG_median,rEEG_lower_margin,rEEG_upper_margin,rEEG_asymmetry,IBI_length_max,IBI_length_median,IBI_burst_prc,IBI_burst_number,EEG_PNA
+ID_1_12h,28.8571428571429,12,ID_1,783.086,31.8071,7.02775,2.61759,95.1435,3.82983,0.791635,0.279029,0.285759,0.722746,0.845412,0.650203,2.5,1.26269,0.71055,0.171658,0.0282376,0.184497,8.30293,19.8091,17.2559,15.2884,0.074892,0.0865889,0.0685254,0.0651439,46.2323,15.4537,167.696,0.64697,5.99688,1.98438,92.0118,111,11.9008333333333
+ID_1_24h,28.8571428571429,24,ID_1,630.084,35.1881,6.69242,2.05663,94.1605,4.7468,0.86932,0.255987,0.299819,0.702997,0.834597,0.643172,2.875,1.25531,0.664364,0.158347,0.0346834,0.235573,8.88017,19.8519,21.5685,19.1127,0.0958272,0.0985343,0.0778043,0.0731076,33.3934,10.4417,156.073,0.69843,10.8344,2.48438,79.7673,193,24.4466666666667
+ID_1_6h,28.8571428571429,6,ID_1,756.902,38.0683,7.24169,2.63732,94.5331,3.99801,0.922381,0.262322,0.292652,0.723599,0.83344,0.647298,2.75,1.25434,0.558739,0.187263,0.0353583,0.187431,8.41808,17.8755,18.694,16.8858,0.0982722,0.103233,0.0895418,0.0732462,44.3028,14.9444,174.059,0.673521,8.97188,2.42188,87.8636,135,5.04416666666667
+ID_2_12h,26.1428571428571,12,ID_2,196.737,11.2582,2.47762,1.12197,93.1005,5.11695,1.24605,0.529312,0.240946,0.712463,0.825792,0.647337,3.5,1.31886,0.516874,0.17664,0.0396251,0.281916,8.50424,23.2913,21.1774,24.6364,0.138368,0.119259,0.0987813,0.0809522,18.7812,6.25713,83.3447,0.672962,13.3094,2.92188,59.4104,310,11.3
+ID_2_24h,26.1428571428571,24,ID_2,277.258,18.7757,2.49543,1.27562,93.0104,5.65396,0.821187,0.265927,0.236224,0.693062,0.785777,0.670514,3.375,1.28085,0.683113,0.217825,0.0532321,0.284276,10.0999,28.3411,26.7218,24.8009,0.200279,0.171709,0.132317,0.0922244,19.242,6.2206,113.42,0.725478,15.9266,3.48438,55.7224,284,24.0630555555556
+ID_2_36h,26.1428571428571,36,ID_2,529.785,24.5009,3.90615,2.00704,93.8137,4.96656,0.755586,0.388315,0.244393,0.722453,0.847656,0.623154,3,1.27854,0.625453,0.206997,0.0397995,0.225171,7.69604,22.2021,19.5374,20.2999,NA,NA,NA,NA,31.9852,9.00585,123.901,0.612776,9.74688,2.73438,78.017,214,35.4913888888889
+ID_2_6h,26.1428571428571,6,ID_2,279.643,15.0895,3.90701,1.58717,92.5637,5.11444,1.3923,0.597432,0.23231,0.733433,0.844505,0.566117,3.84375,1.36859,0.441964,0.208582,0.0304873,0.244003,7.9617,20.6455,19.651,22.8855,0.117252,0.10552,0.0937247,0.0761525,22.129,7.75948,95.7494,0.649074,10.9957,3.10938,68.7706,283,6.52694444444444
+ID_3_12h,24.7142857142857,12,ID_3,325.95,21.4567,4.09293,1.18157,92.6981,5.47712,1.16133,0.347501,0.252648,0.738952,0.797749,0.669079,3.75,1.2907,0.557465,0.213393,0.0335636,0.300465,8.93401,21.0425,22.9489,24.8431,0.180366,0.170423,0.137304,0.123672,20.7698,6.68901,114.925,0.680771,14.525,3.40234,61.8906,270.5,12.6536111111111
+ID_3_24h,24.7142857142857,24,ID_3,364.185,24.5011,4.56409,1.31615,92.4991,5.81512,1.23479,0.364949,0.279737,0.723574,0.81729,0.661957,3.71875,1.27917,0.687027,0.219304,0.0448372,0.37209,9.52078,24.4393,26.0545,32.531,0.179892,0.186326,0.165909,0.145481,25.162,7.13141,124.116,0.665515,11.9937,3.07031,67.5096,269,23.1147222222222
+ID_3_36h,24.7142857142857,36,ID_3,606.37,28.1904,6.14061,1.64656,94.7085,4.01541,0.956139,0.282075,0.241363,0.761242,0.809271,0.642548,2.5625,1.24402,0.694041,0.23016,0.0482635,0.419797,9.00329,26.5541,31.1085,33.4893,0.144333,0.163586,0.130114,0.109818,29.3043,9.04784,142.748,0.643887,7.775,2.48438,76.5989,264.5,36.6636111111111
+ID_3_48h,24.7142857142857,48,ID_3,802.139,33.1783,5.67105,1.62874,94.5448,4.17219,0.828955,0.262289,0.240045,0.725937,0.827491,0.679313,2.65625,1.24002,0.567398,0.212814,0.0488961,0.285689,7.70678,19.9963,23.6917,25.2451,0.132794,0.14491,0.125898,0.102055,30.1545,10.1307,151.935,0.612344,8.68555,2.63281,80.0012,206,47.6166666666667
+ID_3_60h,24.7142857142857,60,ID_3,605.658,27.1368,6.03823,2.03588,94.1721,4.62741,1.14929,0.403955,0.25121,0.77109,0.845946,0.689265,2.875,1.31675,0.530601,0.201732,0.0300406,0.267419,7.69861,19.3007,23.2235,20.3469,0.168595,0.143842,0.103414,0.0822668,29.9535,12.0981,139.332,0.630491,8.52344,2.48438,84.7707,186,59.0936111111111
+ID_4_12h,24,12,ID_4,248.347,10.8231,1.95601,0.532251,95.1556,3.78976,0.804248,0.22445,0.244095,0.743564,0.769187,0.632044,2.375,1.27955,0.673312,0.218259,0.0459831,0.310162,11.2303,23.5712,30.6512,29.0377,0.183845,0.189312,0.1973,0.139802,17.3305,5.95094,92.0625,0.75957,17.9219,3.85938,50.4094,270.5,12.8283333333333
+ID_4_24h,24,24,ID_4,470.612,21.4874,4.89286,1.23554,94.4584,4.13679,1.03731,0.316193,0.31147,0.74103,0.79071,0.660432,2.75,1.24531,0.639261,0.217348,0.0525615,0.371716,9.96347,19.6547,32.773,33.9847,0.159281,0.153695,0.164395,0.112124,23.6845,9.23198,129.774,0.68625,14.35,2.73438,59.1455,204,23.8961111111111
+ID_4_36h,24,36,ID_4,1031.93,29.7922,9.36173,2.61298,95.8561,3.03398,0.943631,0.27123,0.303194,0.738068,0.809891,0.619204,2.25,1.24646,0.970272,0.237062,0.0419615,0.433504,12.1443,22.3855,36.8605,39.9052,0.219026,0.178471,0.216899,0.171487,29.7953,9.95643,186.499,0.716229,13.4184,2.73438,70.7358,221.5,36.6602777777778
+ID_4_48h,24,48,ID_4,1184.95,32.8088,7.31412,3.13044,96.0617,2.72288,0.695815,0.258884,0.265445,0.747503,0.824723,0.627803,2.125,1.25125,0.847898,0.250202,0.0448356,0.293382,11.5941,21.6472,30.8392,30.4088,0.144161,0.125602,0.118833,0.0955774,38.5784,10.7394,205.808,0.708253,12.2469,2.73438,77.3093,179,47.4211111111111
+ID_4_60h,24,60,ID_4,417.16,11.1597,2.91034,1.0754,94.6088,3.64088,1.14008,0.566679,0.302738,0.771285,0.775724,0.5516,2.8125,1.33018,1.42852,0.343453,0.0626443,0.579016,21.4081,33.1871,58.4941,66.1479,0.33396,0.23328,0.265188,0.191145,10.1496,4.87109,142.684,0.873895,24.475,7.03906,30.4074,251.5,59
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