diff --git a/README.Rmd b/README.Rmd
index 8d787170..75fd5ce1 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -39,7 +39,7 @@ knitr::opts_chunk$set(
   
 "The United States Department of Commerce (DOC) GitHub project code is provided on an 'as is' basis and the user assumes responsibility for its use. DOC has relinquished control of the information and no longer has responsibility to protect the integrity, confidentiality, or availability of the information. Any claims against the Department of Commerce stemming from the use of its GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government."
 
-<!-- - This project code is made available through GitHub but is managed by NOAA at https://vlab.ncep.noaa.gov/redmine/projects/integrated-fisheries-toolbox/files -->
+<!-- - This project code is made available through GitHub but is managed by NOAA at https://vlab.noaa.gov/redmine/projects/integrated-fisheries-toolbox/files -->
   
   ***** *******
 
@@ -159,7 +159,7 @@ fore$Nforecastyrs
 
 However, an assessment will be conducted every 3 years and 3 years of forecasting is required. SSMSE will modify this value to the appropriate number of forecasting years.
 
-More information on using the forecast module in SS to forecast catches is available in the [Stock Synthesis users manual](https://vlab.ncep.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132).
+More information on using the forecast module in SS to forecast catches is available in the [Stock Synthesis users manual](https://vlab.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132).
 
 
 ## Adding observation error: Specify how to sample data from the Operating model
diff --git a/README.md b/README.md
index b5395441..76334bea 100644
--- a/README.md
+++ b/README.md
@@ -63,7 +63,7 @@ The Department of Commerce seal and logo, or the seal and logo of a DOC
 bureau, shall not be used in any manner to imply endorsement of any
 commercial product or activity by DOC or the United States Government.”
 
-<!-- - This project code is made available through GitHub but is managed by NOAA at https://vlab.ncep.noaa.gov/redmine/projects/integrated-fisheries-toolbox/files -->
+<!-- - This project code is made available through GitHub but is managed by NOAA at https://vlab.noaa.gov/redmine/projects/integrated-fisheries-toolbox/files -->
 
 -----
 
@@ -257,7 +257,7 @@ number of forecasting years.
 
 More information on using the forecast module in SS to forecast catches
 is available in the [Stock Synthesis users
-manual](https://vlab.ncep.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132).
+manual](https://vlab.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132).
 
 ## Adding observation error: Specify how to sample data from the Operating model
 
diff --git a/docs/index.html b/docs/index.html
index fd09795c..fadb8973 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -105,7 +105,7 @@
           </div>
             <ul id = "assocaited_tools">
 
-                <li><a href="https://vlab.ncep.noaa.gov/web/stock-synthesis"><i>SS</i></a></li>
+                <li><a href="https://vlab.noaa.gov/web/stock-synthesis"><i>SS</i></a></li>
 
                 <li><a href="https://nmfs-fish-tools.github.io/DST"><i>DST</i></a></li>
 
diff --git a/docs/manual/SSMSE.html b/docs/manual/SSMSE.html
index 96fe427a..b6e0da16 100644
--- a/docs/manual/SSMSE.html
+++ b/docs/manual/SSMSE.html
@@ -265,7 +265,7 @@ <h3><span class="header-section-number">3.3.2</span> Using a custom management s
 </div>
 <div id="sampling-options" class="section level2">
 <h2><span class="header-section-number">3.4</span> Sampling options</h2>
-<p>Currently, the only available sampling option is to use the bootstrapping module within SS itself. This means specifying <code>use_SS_boot_vec = TRUE</code>. Details on how sampling is done using the bootstrapping module in SS is available in the “Bootstrap Data Files” section of the <a href="https://vlab.ncep.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view_file/11684231">SS user manual</a>.</p>
+<p>Currently, the only available sampling option is to use the bootstrapping module within SS itself. This means specifying <code>use_SS_boot_vec = TRUE</code>. Details on how sampling is done using the bootstrapping module in SS is available in the “Bootstrap Data Files” section of the <a href="https://vlab.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view_file/11684231">SS user manual</a>.</p>
 <p>Users also need to specify how and which data types should be sampled for each future year in the simulation in <code>sample_struct_list</code>. <code>sample_struct_list</code> is a list of lists. The first level is a list for each scenario; then, for the scenario, there is a list of dataframes, each of which specifying which years and fleets of data should be sampled in the future as well as which standard errors or sample sizes should be used.</p>
 <p>The helper function <code>create_sample_struct()</code> can be used to help users generate the list of dataframes for a scenario. See an example of this function’s use in the <a href="#sample">simple example</a> or by typing <code>?SSMSE::create_sample_struct()</code> into the R console.</p>
 </div>
diff --git a/docs/manual/intro.html b/docs/manual/intro.html
index aaabfd4c..49a3718f 100644
--- a/docs/manual/intro.html
+++ b/docs/manual/intro.html
@@ -195,7 +195,7 @@ <h1>
 <h1><span class="header-section-number">1</span> Introduction</h1>
 <div id="purpose" class="section level2">
 <h2><span class="header-section-number">1.1</span> Purpose</h2>
-<p>SSMSE was developed to increase the ease of using <a href="https://vlab.ncep.noaa.gov/web/stock-synthesis">Stock Synthesis</a> (SS) directly as an operating model in an Management Strategy evaluation. The approach requires a conditioned Stock Synthesis model, which is treated as the Operating Model and a Stock Synthesis model to use as the Estimation Model (EM) and to specify the Management procedure through the Stock Synthesis forecasting model.</p>
+<p>SSMSE was developed to increase the ease of using <a href="https://vlab.noaa.gov/web/stock-synthesis">Stock Synthesis</a> (SS) directly as an operating model in an Management Strategy evaluation. The approach requires a conditioned Stock Synthesis model, which is treated as the Operating Model and a Stock Synthesis model to use as the Estimation Model (EM) and to specify the Management procedure through the Stock Synthesis forecasting model.</p>
 </div>
 <div id="funs" class="section level2">
 <h2><span class="header-section-number">1.2</span> Functions in SSMSE</h2>
diff --git a/docs/manual/simple.html b/docs/manual/simple.html
index 0a85a4f2..b6637305 100644
--- a/docs/manual/simple.html
+++ b/docs/manual/simple.html
@@ -252,7 +252,7 @@ <h2><span class="header-section-number">2.3</span> Examine the management proced
 <div class="sourceCode" id="cb20"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb20-1" title="1">fore<span class="op">$</span>Nforecastyrs</a></code></pre></div>
 <pre><code>[1] 1</code></pre>
 <p>However, an assessment will be conducted every 3 years and 3 years of forecasting is required. SSMSE will modify this value to the appropriate number of forecasting years.</p>
-<p>More information on using the forecast module in SS to forecast catches is available in the <a href="https://vlab.ncep.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132">Stock Synthesis users manual</a>.</p>
+<p>More information on using the forecast module in SS to forecast catches is available in the <a href="https://vlab.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132">Stock Synthesis users manual</a>.</p>
 </div>
 <div id="adding-observation-error-specify-how-to-sample-data-from-the-operating-model-sample" class="section level2">
 <h2><span class="header-section-number">2.4</span> Adding observation error: Specify how to sample data from the Operating model (#sample)</h2>
diff --git a/inst/bookdown/01-intro.Rmd b/inst/bookdown/01-intro.Rmd
index a3d59ff8..90f8fe9a 100644
--- a/inst/bookdown/01-intro.Rmd
+++ b/inst/bookdown/01-intro.Rmd
@@ -2,7 +2,7 @@
 
 ## Purpose
 
-SSMSE was developed to increase the ease of using [Stock Synthesis](https://vlab.ncep.noaa.gov/web/stock-synthesis) (SS) directly as an operating model in an Management Strategy evaluation. The approach requires a conditioned Stock Synthesis model, which is treated as the Operating Model and a Stock Synthesis model to use as the Estimation Model (EM) and to specify the Management procedure through the Stock Synthesis forecasting model. 
+SSMSE was developed to increase the ease of using [Stock Synthesis](https://vlab.noaa.gov/web/stock-synthesis) (SS) directly as an operating model in an Management Strategy evaluation. The approach requires a conditioned Stock Synthesis model, which is treated as the Operating Model and a Stock Synthesis model to use as the Estimation Model (EM) and to specify the Management procedure through the Stock Synthesis forecasting model. 
 
 ## Functions in SSMSE {#funs}
 
diff --git a/inst/bookdown/02-ex-simple.Rmd b/inst/bookdown/02-ex-simple.Rmd
index 5268d5e9..8f24bbcb 100644
--- a/inst/bookdown/02-ex-simple.Rmd
+++ b/inst/bookdown/02-ex-simple.Rmd
@@ -84,7 +84,7 @@ fore$Nforecastyrs
 
 However, an assessment will be conducted every 3 years and 3 years of forecasting is required. SSMSE will modify this value to the appropriate number of forecasting years.
 
-More information on using the forecast module in SS to forecast catches is available in the [Stock Synthesis users manual](https://vlab.ncep.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132).
+More information on using the forecast module in SS to forecast catches is available in the [Stock Synthesis users manual](https://vlab.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view/4513132).
 
 
 ## Adding observation error: Specify how to sample data from the Operating model (#sample)
diff --git a/inst/bookdown/03-runSSMSE.Rmd b/inst/bookdown/03-runSSMSE.Rmd
index edd7a683..d6075d21 100644
--- a/inst/bookdown/03-runSSMSE.Rmd
+++ b/inst/bookdown/03-runSSMSE.Rmd
@@ -82,7 +82,7 @@ run_result_custom <- run_SSMSE(
 
 ## Sampling options
 
-Currently, the only available sampling option is to use the bootstrapping module within SS itself. This means specifying `use_SS_boot_vec = TRUE`. Details on how sampling is done using the bootstrapping module in SS is available in the "Bootstrap Data Files" section of the [SS user manual](https://vlab.ncep.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view_file/11684231).
+Currently, the only available sampling option is to use the bootstrapping module within SS itself. This means specifying `use_SS_boot_vec = TRUE`. Details on how sampling is done using the bootstrapping module in SS is available in the "Bootstrap Data Files" section of the [SS user manual](https://vlab.noaa.gov/web/stock-synthesis/document-library/-/document_library/0LmuycloZeIt/view_file/11684231).
 
 Users also need to specify how and which data types should be sampled for each future year in the simulation in `sample_struct_list`. `sample_struct_list` is a list of lists. The first level is a list for each scenario; then, for the scenario, there is a list of dataframes, each of which specifying which years and fleets of data should be sampled in the future as well as which standard errors or sample sizes should be used.
 
diff --git a/inst/extdata/models/cod/Report.sso b/inst/extdata/models/cod/Report.sso
index 2c19cb5d..523366a8 100644
--- a/inst/extdata/models/cod/Report.sso
+++ b/inst/extdata/models/cod/Report.sso
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 
 StartTime: Thu Sep 03 07:21:47 2020
 EndTime: Thu Sep 03 07:24:47 2020
diff --git a/inst/extdata/models/cod/control.ss b/inst/extdata/models/cod/control.ss
index 3db14bf1..f0a15044 100644
--- a/inst/extdata/models/cod/control.ss
+++ b/inst/extdata/models/cod/control.ss
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 #_data_and_control_files: ss3.dat // em.ctl
 0  # 0 means do not read wtatage.ss; 1 means read and use wtatage.ss and also read and use growth parameters
 1  #_N_Growth_Patterns
diff --git a/inst/extdata/models/cod/control.ss_new b/inst/extdata/models/cod/control.ss_new
index 9aff3eb6..441d102b 100644
--- a/inst/extdata/models/cod/control.ss_new
+++ b/inst/extdata/models/cod/control.ss_new
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 #_data_and_control_files: ss3.dat // control.ss
 0  # 0 means do not read wtatage.ss; 1 means read and use wtatage.ss and also read and use growth parameters
 1  #_N_Growth_Patterns (Growth Patterns, Morphs, Bio Patterns, GP are terms used interchangeably in SS)
diff --git a/inst/extdata/models/cod/data.ss_new b/inst/extdata/models/cod/data.ss_new
index 3f8365c6..f5afdfb6 100644
--- a/inst/extdata/models/cod/data.ss_new
+++ b/inst/extdata/models/cod/data.ss_new
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 #_Start_time: Thu Sep 03 07:24:47 2020
 #_Number_of_datafiles: 2
 #C data file created using the SS_writedat function in the R package r4ss
diff --git a/inst/extdata/models/cod/starter.ss_new b/inst/extdata/models/cod/starter.ss_new
index c97f650f..69b06366 100644
--- a/inst/extdata/models/cod/starter.ss_new
+++ b/inst/extdata/models/cod/starter.ss_new
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 #C starter file written by R function SS_writestarter
 #C rerun model to get more complete formatting in starter.ss_new
 #C should work with SS version: 3.30
diff --git a/inst/extdata/test_mod/cod_initOM_for_tests/Report.sso b/inst/extdata/test_mod/cod_initOM_for_tests/Report.sso
index db1f8800..81e728f1 100644
--- a/inst/extdata/test_mod/cod_initOM_for_tests/Report.sso
+++ b/inst/extdata/test_mod/cod_initOM_for_tests/Report.sso
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 
 StartTime: Wed Apr 08 10:52:36 2020
 EndTime: Wed Apr 08 10:52:37 2020
diff --git a/inst/extdata/test_mod/cod_initOM_for_tests/control.ss b/inst/extdata/test_mod/cod_initOM_for_tests/control.ss
index 85a16a92..28169d25 100644
--- a/inst/extdata/test_mod/cod_initOM_for_tests/control.ss
+++ b/inst/extdata/test_mod/cod_initOM_for_tests/control.ss
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 #C file created using the SS_writectl function in the R package r4ss
 #C file write time: 2020-04-08 10:52:31
 #_data_and_control_files: ss3.dat // control.ss
diff --git a/inst/extdata/test_mod/cod_initOM_for_tests/data.ss b/inst/extdata/test_mod/cod_initOM_for_tests/data.ss
index d3389507..3c922cbd 100644
--- a/inst/extdata/test_mod/cod_initOM_for_tests/data.ss
+++ b/inst/extdata/test_mod/cod_initOM_for_tests/data.ss
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 #_Start_time: Wed Apr 08 10:52:38 2020
 #_Number_of_datafiles: 2
 #C data file created using the SS_writedat function in the R package r4ss
diff --git a/inst/extdata/test_mod/cod_initOM_for_tests/starter.ss b/inst/extdata/test_mod/cod_initOM_for_tests/starter.ss
index 2d003928..8199b63a 100644
--- a/inst/extdata/test_mod/cod_initOM_for_tests/starter.ss
+++ b/inst/extdata/test_mod/cod_initOM_for_tests/starter.ss
@@ -2,7 +2,7 @@
 #Stock Synthesis (SS) is a work of the U.S. Government and is not subject to copyright protection in the United States.
 #Foreign copyrights may apply. See copyright.txt for more information.
 #_user_support_available_at:NMFS.Stock.Synthesis@noaa.gov
-#_user_info_available_at:https://vlab.ncep.noaa.gov/group/stock-synthesis
+#_user_info_available_at:https://vlab.noaa.gov/group/stock-synthesis
 #C starter file written by R function SS_writestarter
 #C rerun model to get more complete formatting in starter.ss_new
 #C should work with SS version: 3.30