From 986528d0fb4d6a23474690e279c131f36d97dfe4 Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Wed, 29 Jan 2025 15:54:07 -0500 Subject: [PATCH] rf: Pass fallback_trt to SDC fit workflows --- fmriprep/workflows/base.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/fmriprep/workflows/base.py b/fmriprep/workflows/base.py index c8a2fb8a7..22674d97b 100644 --- a/fmriprep/workflows/base.py +++ b/fmriprep/workflows/base.py @@ -553,7 +553,10 @@ def init_single_subject_wf(subject_id: str): from sdcflows import fieldmaps as fm from sdcflows.workflows.base import init_fmap_preproc_wf + fallback_trt = config.workflow.fallback_total_readout_time fmap_wf = init_fmap_preproc_wf( + use_metadata_estimates=fallback_trt == 'estimated', + fallback_total_readout_time=fallback_trt if isinstance(fallback_trt, float) else None, debug='fieldmaps' in config.execution.debug, estimators=fmap_estimators, omp_nthreads=omp_nthreads,