Prepare for PR to dev/gfdl#6

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nikizadehgfdl wants to merge 1575 commits intonikizadehgfdl:merge-bgc-obc-3_fix_restartfrom NOAA-GFDL:dev/gfdl

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Commits on Jul 9, 2024

+Renamed myStats scale argument to unscale
Hallberg-NOAA
committed

Commits on Jul 10, 2024

+Add a better variant of add_LOTW_BBL_diffusivity

Hallberg-NOAA
authored and
marshallward
committed
+Add optional unscale arguments to checksums

Hallberg-NOAA
authored and
marshallward
committed
+Add optional unscale arguments to MOM_write_field

Hallberg-NOAA
authored and
marshallward
committed

Commits on Jul 13, 2024

Commits on Jul 15, 2024

+Add and use query_debugging_checks
Hallberg-NOAA
committed

Commits on Jul 17, 2024

(*)+Restore USE_WRIGHT_2ND_DERIV_BUG functionality

Hallberg-NOAA
authored and
adcroft
committed

Commits on Jul 21, 2024

*Possibly initialize h_ML from MLD in restart file
Hallberg-NOAA
committed

Commits on Jul 22, 2024

Improve MOM_surface_chksum
Hallberg-NOAA
committed

Commits on Jul 24, 2024

Inline harmonic analysis

c2xu
authored and
Hallberg-NOAA
committed
Inline harmonic analysis

c2xu
authored and
Hallberg-NOAA
committed

Commits on Jul 26, 2024

Perform unit conversion for internal heat only when it is applicable

yichengt900
authored and
adcroft
committed
Adding Bodner reference

kshedstrom
authored and
adcroft
committed
Failing attempt to link to mle docs.

kshedstrom
authored and
adcroft
committed
Two more references

kshedstrom
authored and
adcroft
committed
Working on documentation links

kshedstrom
authored and
adcroft
committed
Added Young reference

kshedstrom
authored and
adcroft
committed
Fix line length in comment

kshedstrom
authored and
adcroft
committed
Delete duplicate entry

kshedstrom
authored and
adcroft
committed
Another duplicate bib entry

kshedstrom
authored and
adcroft
committed
Another duplicate ref

kshedstrom
authored and
adcroft
committed
Clean out another duplicate ref.

kshedstrom
authored and
adcroft
committed
Fix the Accad ref.

kshedstrom
authored and
adcroft
committed
still cleaning the docs

kshedstrom
authored and
adcroft
committed
Fix case

kshedstrom
authored and
adcroft
committed
Cleaning up tides section

kshedstrom
authored and
adcroft
committed

Commits on Jul 27, 2024

*+Fix non-Boussinesq MASS_WEIGHT_IN_PGF bug

Hallberg-NOAA
authored and
adcroft
committed

Commits on Jul 29, 2024

Commits on Jul 30, 2024

Merge branch 'main' into main-to-gfdl_2024-05-31
adcroft
committed

Commits on Jul 31, 2024

Commits on Aug 1, 2024

Removes remap_via_sub_cells(), after copying code into remapping_core_h()

adcroft
authored and
Hallberg-NOAA
committed
Add gustless Tau to fluxes extracted from IOB by FMS cap.

brandon.reichl
authored and
Hallberg-NOAA
committed

Commits on Aug 2, 2024

(*)Add parentheses in end_value_h4 for FMAs
Hallberg-NOAA
committed
Adds new pre-defined coordinate WOA09INT

adcroft
authored and
marshallward
committed
Adds new pre-defined coordinate WOA23INT

adcroft
authored and
marshallward
committed
Fix bugs in setting GxSpV_u and GxSpV_v in MOM_isopycnal_slopes (#701 )
Wendazhang33
authored
Add option to use non-surface density in MLD_003

Theresa Morrison
authored and
Hallberg-NOAA
committed
Move MLD Diagnostics out of MOM_diabatic_aux.F90

Theresa Morrison
authored and
Hallberg-NOAA
committed

Commits on Aug 6, 2024

Commits on Aug 10, 2024

Commits on Aug 16, 2024

Merge pull request #136 from jiandewang/feature/update-to-main-20240531
jiandewang
authored

Commits on Aug 20, 2024

* Fix for spatially varying Bodner fields.

kshedstrom
authored and
marshallward
committed

Commits on Aug 21, 2024

Fix USE_CONT_THICKNESS bug

awallcraft
authored and
marshallward
committed
Directional linear wave drag (#703 )
c2xu
authored
Restore computation of vorticity in MOM_hor_visc.F90

Pperezhogin
authored and
marshallward
committed

Commits on Aug 24, 2024

Merge pull request mom-ocean#1634 from Hallberg-NOAA/FMA_rotational_symmetry_main
Hallberg-NOAA
authored

Commits on Aug 25, 2024

Merge remote-tracking branch 'MAIN/main' into feature/update-to-main-20240824
jiandewang
committed

Commits on Sep 3, 2024

Makedep output cleanup and PEP8 fixes
marshallward
committed

Commits on Sep 4, 2024

Merge branch 'main' into dev/gfdl
Hallberg-NOAA
committed

Commits on Sep 6, 2024

Inline harmonic analysis

c2xu
authored and
marshallward
committed

Commits on Sep 9, 2024

Commits on Sep 10, 2024

Streaming filter (#675 )
c2xu
authored

Commits on Sep 11, 2024

+Optionally use SSH in calculate density for PGF

Hallberg-NOAA
authored and
marshallward
committed
(*)Refactor p_ave calculation

Hallberg-NOAA
authored and
marshallward
committed

Commits on Sep 12, 2024

Rotate ice shelf forcing and initialization

Hallberg-NOAA
authored and
marshallward
committed

Commits on Sep 14, 2024

Merge pull request mom-ocean#1639 from jiandewang/dev-emc-20240909-cpl-scalar
jiandewang
authored

Commits on Sep 17, 2024

+Add MASS_WEIGHT_IN_PRESSURE_GRADIENT_TOP

claireyung
authored and
marshallward
committed
+Add top mass_weight_in_PGF option to 13 integrals

Hallberg-NOAA
authored and
marshallward
committed
+Add CORRECTION_INTXPA

claireyung
authored and
marshallward
committed
+Add CORRECTION_INTXPA_5PT

claireyung
authored and
marshallward
committed
+Add RESET_INTXPA_INTEGRAL

claireyung
authored and
marshallward
committed
Revisions of sub-ice pressure gradient fixes

Hallberg-NOAA
authored and
marshallward
committed
*Refactor CORRECTION_INTX_PA

Hallberg-NOAA
authored and
marshallward
committed
*Non-Boussinesq code for RESET_INTXPA_INTEGRAL

Hallberg-NOAA
authored and
marshallward
committed
+(*)Add 5-point quadrature in RESET_INTXPA_INTEGRAL

Hallberg-NOAA
authored and
marshallward
committed
+(*)Eliminate CORRECTION_INTXPA_5PT

Hallberg-NOAA
authored and
marshallward
committed
*Set MASS_WEIGHT_IN_PRESSURE_GRADIENT in .testing

Hallberg-NOAA
authored and
marshallward
committed
Dummy code to suppress errors in posix.F90
marshallward
committed
F2023: Fix argument orders and IO statements
marshallward
committed
Reorder arguments in FMS_cap functions
marshallward
committed
CI: Fortran 2018 testing
marshallward
committed

Commits on Sep 18, 2024

Commits on Sep 26, 2024

Merge branch 'main' into main-to-gfdl-2024-09-26
marshallward
committed

Commits on Sep 27, 2024

EBT Backscatter (#706 )

authored

Commits on Sep 30, 2024

change CMOR names, fixes #709

Raphael Dussin
authored and
marshallward
committed

Commits on Oct 4, 2024

Fix .testing make for regression tests

herrwang0
authored and
marshallward
committed

Commits on Oct 11, 2024

Bugfix in MOM_porous_barriers

herrwang0
authored and
marshallward
committed

Commits on Oct 24, 2024

Update version of checkout action (@v4 )

adcroft
authored and
marshallward
committed

Commits on Oct 30, 2024

Switch runner and allow for more run time

adcroft
authored and
marshallward
committed
+Eliminated h_neglect argument to remapping_core_h

Hallberg-NOAA
authored and
adcroft
committed
Change default of USE_POROUS_BARRIER to false

herrwang0
authored and
adcroft
committed

Commits on Nov 1, 2024

Set truncation file handle check from < 0 to == -1 (#739 )
marshallward
authored

Commits on Nov 5, 2024

CI: Consolidate unit test rules, codecov pathfix

marshallward
authored and
adcroft
committed
adding a constant mixing efficiency to internal tides

Raphael Dussin
authored and
adcroft
committed
Revert the change from VISC_REM_CONT_VEL_FIX

herrwang0
authored and
adcroft
committed
Rename VISC_REM bugfix parameters

herrwang0
authored and
adcroft
committed
Replace hard-coded parameter Rrho0 with runtime parameter Max_Rrho_salt_fingers

brandon.reichl
authored and
adcroft
committed

Commits on Nov 8, 2024

Add REMAPPING_SCHEME for OBC, ODA and SPONGE (#751 )
awallcraft
authored

Commits on Nov 13, 2024

Add SQG vertical structure to eddy diffusivities (#738 )

Wendazhang33
and
adcroft
authored

Commits on Nov 26, 2024

*+HOR_VISC_ANSWER_DATE logic fix

Hallberg-NOAA
authored and
marshallward
committed

Commits on Nov 30, 2024

Bug fix for write_energy with short dt (#749 )
herrwang0
authored

Commits on Dec 4, 2024

Remove extra copy of compute_global_grid_integrals

Hallberg-NOAA
authored and
adcroft
committed
Make REMAPPING_USE_OM4_SUBCELLS the default

awallcraft
authored and
adcroft
committed

Commits on Dec 5, 2024

Commits on Dec 9, 2024

Commits on Dec 12, 2024

*Fix a bug when EPBL_ORIGINAL_PE_CALC is false

Hallberg-NOAA
authored and
adcroft
committed
+Add EPBL_MLD_ITER_BUG runtime parameter

Hallberg-NOAA
authored and
adcroft
committed
+Add run-time ability to debug ePBL sensitivities

Hallberg-NOAA
authored and
adcroft
committed
+Add and test find_Kd_from_PE_chg

Hallberg-NOAA
authored and
adcroft
committed
+(*)Add ePBL bottom boundary mixing option

Hallberg-NOAA
authored and
adcroft
committed
+Add DECAY_ADJUSTED_BBL_TKE option for ePBL BBL

Hallberg-NOAA
authored and
adcroft
committed
+Add optional unscale argument to reproducing_sum

Hallberg-NOAA
authored and
marshallward
committed
+Add RZL2_to_kg element to unit_scale_type

Hallberg-NOAA
authored and
marshallward
committed
Work in rescaled units in write_energy

Hallberg-NOAA
authored and
marshallward
committed
Use reproducing_sum with unscale in 5 places

Hallberg-NOAA
authored and
marshallward
committed
Bug fix related to directional internal wave drag (#774 )

c2xu
and
Hallberg-NOAA
authored

Commits on Dec 30, 2024

Commits on Jan 1, 2025

Updates to use EPBL_BBL_EFFIC

brandon.reichl
authored and
Hallberg-NOAA
committed
Move MOM_generic_tracer with no changes (#22 )

authored and
Hallberg-NOAA
committed

Commits on Jan 2, 2025

Corrected the rescaling of 5 KPP diagnostics

Hallberg-NOAA
authored and
marshallward
committed
+Add a vector of defaults to get_param_array_int

Hallberg-NOAA
authored and
marshallward
committed

Commits on Jan 6, 2025

set descale in reproducing_sum_3d

yichengt900
authored and
Hallberg-NOAA
committed

Commits on Jan 7, 2025

Commits on Jan 8, 2025

Commits on Jan 9, 2025

Users set solo driver forcing time records per day
Hallberg-NOAA
committed

Commits on Jan 14, 2025

Refactor SAL in MOM_PressureForce_FV

herrwang0
authored and
Hallberg-NOAA
committed
Add option for SAL to use bottom pressure anomaly

herrwang0
authored and
Hallberg-NOAA
committed
Rename variables with tides in Pressure Force

herrwang0
authored and
Hallberg-NOAA
committed
Alternative method for SAL and tides in Boussinesq

herrwang0
authored and
Hallberg-NOAA
committed
Remove rescaling bottom pressure in SAL

herrwang0
authored and
Hallberg-NOAA
committed
Add answer date flag for tide/SAL

herrwang0
authored and
Hallberg-NOAA
committed
Refactor Love_scaling calculation in SAL module

herrwang0
authored and
Hallberg-NOAA
committed
+Refactor MOM_opacity to replace hard-coded params
Hallberg-NOAA
committed
implement spatially varying decay rates for internal tides leakage (#794 )

raphaeldussin
and
Raphael Dussin
authored
Add ice shelf pressure initialisation bug fix (#800 )
claireyung
authored

Commits on Jan 15, 2025

+Add the optional argument old_name to get_param
Hallberg-NOAA
committed

Commits on Jan 16, 2025

Commits on Jan 19, 2025

Nodal modulation

c2xu
authored and
Hallberg-NOAA
committed
Correct unit conversion for BS_coeff_h diagnostic
Hallberg-NOAA
committed

Commits on Jan 20, 2025

Streaming Filter

c2xu
authored and
Hallberg-NOAA
committed

Commits on Jan 21, 2025

Commits on Jan 22, 2025

Commits on Jan 24, 2025

Rescale 7 ice shelf variables
Hallberg-NOAA
committed

Commits on Jan 27, 2025

Commits on Jan 29, 2025

Add Option to Specify Tracer Advection Time Step (#757 )

authored

Commits on Jan 31, 2025

Deprecate TIDE_SAL_SCALAR_VALUE (#819 )
herrwang0
authored

Commits on Feb 3, 2025

Commits on Feb 5, 2025

Correct bug in kappa shear viscosity with vertex shear option. (#824 )
breichl
authored

Commits on Feb 12, 2025

+Add PHILLIPS_ANSWER_DATE runtime parameter
Hallberg-NOAA
committed

Commits on Feb 13, 2025

Commits on Feb 14, 2025

MOM_murmur_hash: MurmurHash3 implementation

marshallward
authored and
Hallberg-NOAA
committed

Commits on Feb 16, 2025

Commits on Feb 18, 2025

Passing shelf_sfc_mass_flux to ice shelf (#818 )

OlgaSergienko
and
NJSchlegel
authored

Commits on Feb 19, 2025

Commits on Feb 21, 2025

+Revise the rescaled units of forces%tau_mag
Hallberg-NOAA
committed

Commits on Feb 23, 2025

Remove Prandtl_turb in vertvisc_type

herrwang0
authored and
Hallberg-NOAA
committed
Refactor a few lines in vertical viscosity

herrwang0
authored and
Hallberg-NOAA
committed

Commits on Feb 25, 2025

Alternative interface to EQN_OF_STATE="LINEAR" (#842 )
awallcraft
authored

Commits on Feb 26, 2025

Fix interior obcs (#814 )
kshedstrom
authored