setup.py

import distribute_setup
distribute_setup.use_setuptools()
from setuptools import setup

setup(
    name='CloudForest',
    version='0.0.1',
    author='Nicholas G. Crawford',
    author_email='ngcrawford@gmail.com',
    url='http://pypi.python.org/pypi/CloudForest/',
    license='LICENSE.txt',
    description='Generate gene and species trees from thousands of loci or across genomic alignments.',
    long_description=open('README.rst').read(),
    test_suite='tests',
    install_requires=[
        "mrjob >= 0.2.8",
        "flask >= 0.8",
        "flask-wtf >= 0.5.2",
        "numpy >= 1.6.1",
        "rpy2 >= 2.2"
    ],
    packages=[
            'cloudforest',
            'cloudforest.tests',
            'cloudforest.webapp',
            ],
    package_data = {
            '':['*.txt'],
            'cloudforest':[
                'tests/alignments/*.oneliners',
                'tests/alignments/*.phylip',
                'tests/alignments/nexus_primates/*',
                'tests/alignments/phylip_primates/*',
                'webapp/static/images/*',
                'webapp/static/javascripts/*',
                'webapp/static/stylesheets/*',
                'webapp/templates/*'
            ]
        },
    include_package_data = True,
    scripts = [
              'cloudforest/nexus2oneliner.py',
              'cloudforest/phylip2oneliner.py',
              'cloudforest/process.py'
              ],
)