diff --git a/NF.jsonld b/NF.jsonld index a8376121..6eb471f3 100644 --- a/NF.jsonld +++ b/NF.jsonld @@ -4945,6 +4945,8 @@ "@id" : "bts:TruSeq" }, { "@id" : "bts:TruSeqstandardtotalRNAlibrarykit" + }, { + "@id" : "bts:OxfordNanoporeDirectRNASequencingKit" }, { "@id" : "bts:unknown" } ], @@ -9623,6 +9625,10 @@ "@id" : "bts:VarioskanLUX" }, { "@id" : "bts:Panorama1.0T" + }, { + "@id" : "bts:OxfordNanopore" + }, { + "@id" : "bts:OtherPlatform" }, { "@id" : "bts:NotApplicable" } ], @@ -9685,6 +9691,17 @@ }, "sms:displayName" : "sNF94.3", "sms:required" : "sms:false" + }, { + "@id" : "bts:OtherPlatform", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "OtherPlatform", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Other Platform", + "sms:required" : "sms:false" }, { "@id" : "bts:unilateral", "@type" : "rdfs:Class", @@ -18507,6 +18524,17 @@ }, "sms:displayName" : "University of South Dakota", "sms:required" : "sms:false" + }, { + "@id" : "bts:OxfordNanopore", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "OxfordNanopore", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Oxford Nanopore", + "sms:required" : "sms:false" }, { "@id" : "bts:EnVision2103MultiplateReader", "@type" : "rdfs:Class", @@ -22808,6 +22836,17 @@ }, "sms:displayName" : "jpg", "sms:required" : "sms:false" + }, { + "@id" : "bts:OxfordNanoporeDirectRNASequencingKit", + "@type" : "rdfs:Class", + "rdfs:comment" : "TBD", + "rdfs:label" : "OxfordNanoporeDirectRNASequencingKit", + "rdfs:subClassOf" : [ ], + "schema:isPartOf" : { + "@id" : "http://schema.biothings.io/" + }, + "sms:displayName" : "Oxford Nanopore Direct RNA Sequencing Kit", + "sms:required" : "sms:false" }, { "@id" : "bts:GermlineVariants", "@type" : "rdfs:Class", diff --git a/modules/Assay/Parameter.yaml b/modules/Assay/Parameter.yaml index d16f680a..49eaa1c0 100644 --- a/modules/Assay/Parameter.yaml +++ b/modules/Assay/Parameter.yaml @@ -108,6 +108,9 @@ enums: TruSeq standard total RNA library kit: description: '' source: https://www.illumina.com/products/by-type/sequencing-kits/library-prep-kits/truseq-stranded-total-rna.html + Oxford Nanopore Direct RNA Sequencing Kit: + description: Vendor catalog SQK-RNA004. + source: https://store.nanoporetech.com/us/sequencing-kits.html unknown: description: information not provided MRISequenceEnum: diff --git a/modules/Assay/Platform.yaml b/modules/Assay/Platform.yaml index 30c3ee29..1300e916 100644 --- a/modules/Assay/Platform.yaml +++ b/modules/Assay/Platform.yaml @@ -216,5 +216,9 @@ enums: source: https://www.thermofisher.com/us/en/home/life-science/lab-equipment/microplate-instruments/plate-readers/models/varioskan.html Panorama 1.0T: description: A conventional MRI scanner from Philips. + Oxford Nanopore: + description: Nanopore sequencing allows a much larger read length range, with easy prep from native or amplified DNA and RNA. + source: https://nanoporetech.com/platform + Other Platform: Not Applicable: description: ''