From e76574793f4e885714e9a1bfad450c4acfcb08aa Mon Sep 17 00:00:00 2001 From: Sofia Stamouli Date: Thu, 7 Sep 2023 11:19:26 +0200 Subject: [PATCH 1/2] Add apptainer automounts --- nf_core/pipeline-template/nextflow.config | 1 + 1 file changed, 1 insertion(+) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index ae62a6ecac..54f03fd0b4 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -163,6 +163,7 @@ profiles { } apptainer { apptainer.enabled = true + apptainer.autoMounts = true conda.enabled = false docker.enabled = false singularity.enabled = false From f0ab6657446eaf85b37b1041e78febbbec9e567f Mon Sep 17 00:00:00 2001 From: Sofia Stamouli Date: Thu, 7 Sep 2023 11:58:28 +0200 Subject: [PATCH 2/2] Update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4c406f9a41..3171acd057 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,6 +12,7 @@ - Save template information to `.nf-core.yml` and deprecate argument `--template-yaml` for `nf-core sync` ([#2388](https://github.com/nf-core/tools/pull/2388) and [#2389](https://github.com/nf-core/tools/pull/2389)) - ([#2397](https://github.com/nf-core/tools/pull/2397)) Remove fixed Ubuntu test and added to standard testing matrix - ([#2396](https://github.com/nf-core/tools/pull/2396)) Reduce container finding error to warning since the registries are not consistent. +- ([#2415](https://github.com/nf-core/tools/pull/2415#issuecomment-1709847086)) Add autoMounts for apptainer. ### Download