From 07aa7401d96c4de5e5cd25b9e69ea06c9984fe23 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Hadrien=20Gourl=C3=A9?= <gourlehadrien@gmail.com> Date: Fri, 10 Aug 2018 08:42:23 +0200 Subject: [PATCH] update test files --- tests/lint_examples/minimal_working_example/Dockerfile | 3 ++- tests/lint_examples/minimal_working_example/Singularity | 6 +++++- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/tests/lint_examples/minimal_working_example/Dockerfile b/tests/lint_examples/minimal_working_example/Dockerfile index 1ed80a41d7..f2ebb853e0 100644 --- a/tests/lint_examples/minimal_working_example/Dockerfile +++ b/tests/lint_examples/minimal_working_example/Dockerfile @@ -4,4 +4,5 @@ LABEL authors="phil.ewels@scilifelab.se" \ description="Docker image containing all requirements for the nf-core tools pipeline" COPY environment.yml / -RUN conda env update -n root -f /environment.yml && conda clean -a +RUN conda env create -f /environment.yml && conda clean -a +ENV PATH /opt/conda/envs/nfcore-tools-0.4/bin:$PATH diff --git a/tests/lint_examples/minimal_working_example/Singularity b/tests/lint_examples/minimal_working_example/Singularity index 5935e8edf0..77cfd71028 100644 --- a/tests/lint_examples/minimal_working_example/Singularity +++ b/tests/lint_examples/minimal_working_example/Singularity @@ -6,9 +6,13 @@ Bootstrap:docker DESCRIPTION Container image containing all requirements for the nf-core/tools pipeline VERSION 0.4 +%environment + PATH=/opt/conda/envs/nfcore-tools-0.4/bin:$PATH + export PATH + %files environment.yml / %post - /opt/conda/bin/conda env update -n root -f /environment.yml + /opt/conda/bin/conda env create -n root -f /environment.yml /opt/conda/bin/conda clean -a