diff --git a/CHANGELOG.md b/CHANGELOG.md
index ea5ec3a8ed..2de939183c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -12,6 +12,7 @@
 
 ### General
 
+- update ruff to 0.2.0 and add it to pre-commit step ([#2725](https://github.com/nf-core/tools/pull/2725))
 - Update codecov/codecov-action digest to e0b68c6 ([#2728](https://github.com/nf-core/tools/pull/2728))
 
 ## [v2.12.1 - Aluminium Wolf - Patch](https://github.com/nf-core/tools/releases/tag/2.12.1) - [2024-02-01]
diff --git a/nf_core/pipeline-template/pyproject.toml b/nf_core/pipeline-template/pyproject.toml
index 7d08e1c8ef..84c16f27cd 100644
--- a/nf_core/pipeline-template/pyproject.toml
+++ b/nf_core/pipeline-template/pyproject.toml
@@ -6,8 +6,8 @@ target-version = "py38"
 select = ["I", "E1", "E4", "E7", "E9", "F", "UP", "N"]
 cache-dir = "~/.cache/ruff"
 
-[tool.ruff.isort]
+[tool.ruff.lint.isort]
 known-first-party = ["nf_core"]
 
-[tool.ruff.per-file-ignores]
+[tool.ruff.lint.per-file-ignores]
 "__init__.py" = ["E402", "F401"]