diff --git a/CHANGELOG.md b/CHANGELOG.md index 66c7400529..2588c30831 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -38,6 +38,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#968](https://github.com/nf-core/sarek/pull/968) - Update all modules - [#1014](https://github.com/nf-core/sarek/pull/1014) - `snpeff_db` is now only the `db` version and not `genome.db` - [#1015](https://github.com/nf-core/sarek/pull/1015) - Increase default value for `--nucleotides_per_second` to `200000` resulting in 21 groups for `GATK.GRCh38` +- [#1019](https://github.com/nf-core/sarek/pull/1019) - Set a default registry outside of profile scope ### Fixed diff --git a/nextflow.config b/nextflow.config index 3737dcd4e7..eecfb0cc8c 100644 --- a/nextflow.config +++ b/nextflow.config @@ -175,7 +175,6 @@ profiles { charliecloud.enabled = false conda.enabled = false docker.enabled = true - docker.registry = 'quay.io' docker.userEmulation = { params.use_gatk_spark ? false : true }.call() podman.enabled = false shifter.enabled = false @@ -200,7 +199,6 @@ profiles { conda.enabled = false docker.enabled = false podman.enabled = true - podman.registry = 'quay.io' shifter.enabled = false singularity.enabled = false } @@ -289,6 +287,12 @@ env { // Capture exit codes from upstream processes when piping process.shell = ['/bin/bash', '-euo', 'pipefail'] +// Set default registry for Docker and Podman independent of -profile +// Will not be used unless Docker / Podman are enabled +// Set to your registry if you have a mirror of containers +docker.registry = 'quay.io' +podman.registry = 'quay.io' + def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss') timeline { enabled = true