diff --git a/modules/local/generate_report.nf b/modules/local/generate_report.nf index 7b945ea5..61ccdd1c 100644 --- a/modules/local/generate_report.nf +++ b/modules/local/generate_report.nf @@ -26,8 +26,6 @@ process GENERATE_REPORT { def args = task.ext.args ?: '' """ - - generate_report.py --type ${output_type} \\ --msa ${msa} \\ --pdb ${pdb.join(' ')} \\ diff --git a/modules/local/run_esmfold.nf b/modules/local/run_esmfold.nf index 9ff2cc6b..83397be1 100644 --- a/modules/local/run_esmfold.nf +++ b/modules/local/run_esmfold.nf @@ -39,7 +39,6 @@ process RUN_ESMFOLD { awk '{print \$2"\\t"\$3"\\t"\$4"\\t"\$6"\\t"\$11}' ${meta.id}_esmfold.pdb | grep -v 'N/A' | uniq > plddt.tsv echo -e Atom_serial_number"\\t"Atom_name"\\t"Residue_name"\\t"Residue_sequence_number"\\t"pLDDT > header.tsv cat header.tsv plddt.tsv > ${meta.id}_plddt_mqc.tsv - cat <<-END_VERSIONS > versions.yml "${task.process}":