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Add TCS as evaluation metric #90

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luisas opened this issue Dec 19, 2023 · 5 comments
Closed

Add TCS as evaluation metric #90

luisas opened this issue Dec 19, 2023 · 5 comments
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@alessiovignoli
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enhancement New feature or request hackathon
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version 1.1

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@luisas
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luisas commented Dec 19, 2023

Description of feature

Add TCS as evaluation metric
@luisas luisas added the enhancement New feature or request label Dec 19, 2023
@luisas luisas added this to the version 1.1 milestone Dec 19, 2023
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luisas commented Mar 14, 2024

https://github.com/luisas/nf_structural_regression/blob/master/modules/evaluate_alignment.nf

TCS from here

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luisas commented Mar 14, 2024

also, make it optionale to pass library (as of TCS_LIB)

@luisas luisas assigned luisas and alessiovignoli and unassigned luisas Mar 18, 2024
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It has to have the following features:

  • handle compressed input, if at beginnin and null container )from IRMSD)
  • output style either csv like aln_compare or what it is and then parse it.
  • skippable.
  • LIB as optional input.

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The module itself has the lib file as optional. But the pipeline for now does not allow for the lib file to be passed to the module. Thing for a future Issue.

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luisas commented Mar 21, 2024

Closed by #115

@luisas luisas closed this as completed Mar 21, 2024
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