diff --git a/phylogenetic/example_data/metadata_all.tsv b/phylogenetic/example_data/metadata_all.tsv index ba8c0c35..01a411da 100644 --- a/phylogenetic/example_data/metadata_all.tsv +++ b/phylogenetic/example_data/metadata_all.tsv @@ -1,4 +1,4 @@ -strain virus accession date region country division city db segment authors url title journal paper_url +strain virus genbank_accession date region country division city db segment authors url title journal paper_url DENV1/VIETNAM/BIDV1862/2008 dengue FJ410220 2008-XX-XX Southeast Asia Vietnam Vietnam Vietnam ? genome Alvarado et al. ? ? ? ? DENV3/WALLIS_AND_FUTUNA/1404838/1989 dengue JQ920487 1989-08-14 ? Wallis And Futuna French Overseas Collectivity Wallis And Futuna ? genome Aubry et al. ? ? ? ? DENV/BRAZIL/SJRP778/2013 dengue KT438585 2013-02-04 South America Brazil Brazil Brazil ? genome Araujo et al. ? ? ? ? diff --git a/phylogenetic/example_data/metadata_denv1.tsv b/phylogenetic/example_data/metadata_denv1.tsv index b697eb54..0574a0c7 100644 --- a/phylogenetic/example_data/metadata_denv1.tsv +++ b/phylogenetic/example_data/metadata_denv1.tsv @@ -1,4 +1,4 @@ -strain virus accession date region country division city db segment authors url title journal paper_url +strain virus genbank_accession date region country division city db segment authors url title journal paper_url DENV1/INDIA/237/1962 dengue JF297572 1962-XX-XX South Asia India India India ? genome Cecilia et al. ? ? ? ? DENV1/CHINA/RL6/2013 dengue KJ470727 2013-09-XX China China China China ? genome Guo et al. ? ? ? ? DENV1/THAILAND/AILANDKPPKDV08491NC04528V0L/2007 dengue JQ993108 2007-XX-XX Southeast Asia Thailand Thailand Thailand ? genome Aldstadt et al. ? ? ? ? diff --git a/phylogenetic/example_data/metadata_denv2.tsv b/phylogenetic/example_data/metadata_denv2.tsv index 31f88305..5c694c00 100644 --- a/phylogenetic/example_data/metadata_denv2.tsv +++ b/phylogenetic/example_data/metadata_denv2.tsv @@ -1,4 +1,4 @@ -strain virus accession date region country division city db segment authors url title journal paper_url +strain virus genbank_accession date region country division city db segment authors url title journal paper_url DENV2/INDONESIA/MKS0084/2007 dengue KC762660 2007-11-21 Southeast Asia Indonesia Makassar Makassar ? genome Bifani et al. ? ? ? ? DENV2/TAIWAN/71/2002 dengue EF016253 2002-XX-XX China Taiwan Taiwan Taiwan ? genome Ke et al. ? ? ? ? DENV2/PAKISTAN/8D/2011 dengue JX042512 2011-XX-XX West Asia Pakistan Pakistan Pakistan ? genome Alvi et al. ? ? ? ? diff --git a/phylogenetic/example_data/metadata_denv3.tsv b/phylogenetic/example_data/metadata_denv3.tsv index 911e8cef..18c5b0aa 100644 --- a/phylogenetic/example_data/metadata_denv3.tsv +++ b/phylogenetic/example_data/metadata_denv3.tsv @@ -1,4 +1,4 @@ -strain virus accession date region country division city db segment authors url title journal paper_url +strain virus genbank_accession date region country division city db segment authors url title journal paper_url DENV3/PUERTO_RICO/BIDV1615/2004 dengue FJ373302 2004-XX-XX North America Puerto Rico Puerto Rico Puerto Rico ? genome Alvarado et al. ? ? ? ? DENV3/THAILAND/BIDV2323/2001 dengue FJ744734 2001-XX-XX Southeast Asia Thailand Kamphaeng Phet Kamphaeng Phet ? genome Alvarado et al. ? ? ? ? DENV3/BANGLADESH/JACOB/NA dengue AY656673 ? South Asia Bangladesh Bangladesh Bangladesh ? genome Aaskov et al. ? ? ? ? diff --git a/phylogenetic/example_data/metadata_denv4.tsv b/phylogenetic/example_data/metadata_denv4.tsv index d3175b21..9d9ce386 100644 --- a/phylogenetic/example_data/metadata_denv4.tsv +++ b/phylogenetic/example_data/metadata_denv4.tsv @@ -1,4 +1,4 @@ -strain virus accession date region country division city db segment authors url title journal paper_url +strain virus genbank_accession date region country division city db segment authors url title journal paper_url DENV4/ECUADOR/FSE2098/2006 dengue GQ139572 2006-XX-XX South America Ecuador Ecuador Ecuador ? genome Alava et al. ? ? ? ? DENV4/BRAZIL/SJRP580/2012 dengue KP188562 2012-12-10 South America Brazil Brazil Brazil ? genome Araujo et al. ? ? ? ? DENV4/BRAZIL/GUSP0670/2013 dengue KP704043 2013-03-17 South America Brazil Brazil Brazil ? genome Balarini et al. ? ? ? ?