From 75c797609d1c18d5896cc5f991f219ef4da39eb7 Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Sat, 9 Nov 2024 19:26:51 +0100
Subject: [PATCH] Fix #1665

---
 .../cram/infer-amino-acid-sequences-with-root-sequence.t        | 2 +-
 .../translate/cram/translate-with-gff-and-gene-name.t           | 2 +-
 tests/functional/translate/cram/translate-with-gff-and-gene.t   | 2 +-
 .../translate/cram/translate-with-gff-and-locus-tag.t           | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/tests/functional/ancestral/cram/infer-amino-acid-sequences-with-root-sequence.t b/tests/functional/ancestral/cram/infer-amino-acid-sequences-with-root-sequence.t
index 0d61ca296..aa60db892 100644
--- a/tests/functional/ancestral/cram/infer-amino-acid-sequences-with-root-sequence.t
+++ b/tests/functional/ancestral/cram/infer-amino-acid-sequences-with-root-sequence.t
@@ -20,7 +20,7 @@ ancestor).
 Check that the reference length was correctly exported as the nuc annotation
 
   $ python3 "$TESTDIR/../../../../scripts/diff_jsons.py" \
-  >   --exclude-regex-paths "['seqid']" -- \
+  >   --exclude-regex-paths "\['seqid'\]" -- \
   >   "$TESTDIR/../data/ancestral_mutations_with_root_sequence.json" \
   >   "$CRAMTMP/$TESTFILE/ancestral_mutations.json"
   {}
diff --git a/tests/functional/translate/cram/translate-with-gff-and-gene-name.t b/tests/functional/translate/cram/translate-with-gff-and-gene-name.t
index 9bb18ded7..06d8fe6a7 100644
--- a/tests/functional/translate/cram/translate-with-gff-and-gene-name.t
+++ b/tests/functional/translate/cram/translate-with-gff-and-gene-name.t
@@ -26,7 +26,7 @@ Other than the sequence ids which will include a temporary path, the JSONs
 should be identical.
 
   $ python3 "${SCRIPTS}/diff_jsons.py" \
-  >  --exclude-regex-paths "['seqid']" -- \
+  >  --exclude-regex-paths "\['seqid'\]" -- \
   >  "${DATA}/zika/aa_muts_gff.json" \
   >  aa_muts.json
   {}
diff --git a/tests/functional/translate/cram/translate-with-gff-and-gene.t b/tests/functional/translate/cram/translate-with-gff-and-gene.t
index 33ef6a3b3..5c8bbb4d3 100644
--- a/tests/functional/translate/cram/translate-with-gff-and-gene.t
+++ b/tests/functional/translate/cram/translate-with-gff-and-gene.t
@@ -23,7 +23,7 @@ Translate amino acids for genes using a GFF3 file where the gene names are store
   amino acid mutations written to .* (re)
 
   $ python3 "${SCRIPTS}/diff_jsons.py" \
-  >  --exclude-regex-paths "['seqid']" -- \
+  >  --exclude-regex-paths "\['seqid'\]" -- \
   >  "${DATA}/zika/aa_muts_gff.json" \
   >  aa_muts.json
   {}
diff --git a/tests/functional/translate/cram/translate-with-gff-and-locus-tag.t b/tests/functional/translate/cram/translate-with-gff-and-locus-tag.t
index 54ffde7a8..d4871ee07 100644
--- a/tests/functional/translate/cram/translate-with-gff-and-locus-tag.t
+++ b/tests/functional/translate/cram/translate-with-gff-and-locus-tag.t
@@ -23,7 +23,7 @@ This is an identical test setup as `translate-with-gff-and-gene.t` but using loc
   amino acid mutations written to .* (re)
 
   $ python3 "${SCRIPTS}/diff_jsons.py" \
-  >  --exclude-regex-paths "['seqid']" -- \
+  >  --exclude-regex-paths "\['seqid'\]" -- \
   >  "${DATA}/zika/aa_muts_gff.json" \
   >  aa_muts.json
   {}