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Refactor actions to use latest schematic (post-refactor) #351

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merged 4 commits into from
Feb 29, 2024
Merged

Refactor actions to use latest schematic (post-refactor) #351

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71e6e10
Update ci-lint-validate-convert.yml
adamjtaylor Feb 28, 2024
0a36105
Update checkout and setup-python dependencies
adamjtaylor Feb 28, 2024
e77aa89
Merge branch 'main' into 340-move-the-ci-to-use-the-refactored-schema…
adamjtaylor Feb 29, 2024
ffb4f09
Merge branch 'main' into 340-move-the-ci-to-use-the-refactored-schema…
adamjtaylor Feb 29, 2024
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24 changes: 7 additions & 17 deletions .github/workflows/ci-lint-validate-convert.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,10 @@ concurrency:
${{ github.sha }}
cancel-in-progress: true

env:
SCHEMATIC_VERSION: '24.2.1'
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

jobs:
lint:
name: Lint CSV
Expand All @@ -34,8 +38,6 @@ jobs:
name: Validate CSV
if: always()
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v3
Expand All @@ -46,12 +48,7 @@ jobs:
- name: Install Schematic
shell: bash
run: |
pip3 install poetry
git clone --single-branch --branch main https://github.com/Sage-Bionetworks/schematic.git
cd schematic
poetry build
pip3 install dist/schematicpy-*-py3-none-any.whl
pip install --force-reinstall typing-extensions==4.5.0
pip install schematicpy==$SCHEMATIC_VERSION

- name: Convert CSV schema
shell: bash
Expand All @@ -69,25 +66,18 @@ jobs:
needs:
- lint
- validate

runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.9'
python-version: '3.10'

- name: Install Schematic
shell: bash
run: |
pip3 install poetry
git clone --single-branch --branch main https://github.com/Sage-Bionetworks/schematic.git
cd schematic
poetry build
pip3 install dist/schematicpy-*-py3-none-any.whl
pip install schematicpy==$SCHEMATIC_VERSION

- name: Convert .csv to .jsonld
shell: bash
Expand Down