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Remove Makefile #26

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nbiederbeck opened this issue Apr 12, 2023 · 1 comment
Closed

Remove Makefile #26

nbiederbeck opened this issue Apr 12, 2023 · 1 comment

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@nbiederbeck
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nbiederbeck commented Apr 12, 2023 •
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I would like to have a solution that is completely independent of the Makefile (except as an entry point for snakemake).

I don't know whether this is feasible.

I think I'm ok with telling the user to issue two commands, e.g.:

snakemake --snakefile workflow/data-selection.smk
snakemake --snakefile workflow/analysis.smk
@nbiederbeck nbiederbeck mentioned this issue Apr 25, 2023
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@LukasNickel
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We agreed that for now there is not really a way to get rid of this.
Can we close this?

@nbiederbeck nbiederbeck reopened this Apr 27, 2023
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@nbiederbeck @LukasNickel