_pkgdown.yml

url: https://natverse.org/neuprintr

reference:
- title: Basic interaction with neuPrint server
  desc: >
    Connect to a server, check what datasets are available (or set the default
    dataset) and get details of the available API calls.
  contents:
  - '`neuprint_connection`'
  - '`neuprint_datasets`'
- title: Simple queries
  desc: Find neurons by name/type or by their ROI innervation
  contents:
  - '`neuprint_search`'
  - '`neuprint_find_neurons`'
- title: Fetch neuron data and metadata
  desc: Read the name, summary metdata and skeleton, synapse data for neurons
  contents:
  - '`neuprint_get_neuron_names`'
  - '`neuprint_get_meta`'
  - '`neuprint_read_neurons`'
  - '`neuprint_get_synapses`'
  - '`neuprint_connectors`'
- title: Connectivity between neurons
  desc: ~
  contents:
  - '`neuprint_connection_table`'
  - '`neuprint_simple_connectivity`'
  - '`neuprint_ROI_connectivity`'
  - '`neuprint_common_connectivity`'
  - '`neuprint_get_adjacency_matrix`'
  - '`neuprint_skeleton_connectivity_matrix`'
  - '`neuprint_get_paths`'
  - '`neuprint_get_shortest_paths`'
  - '`neuprint_cosine_matrix`'
  - '`neuprint_cosine_plot`'
- title: ROI information
  desc: List, visualise or summarise synpases in regions of interest.
  contents:
  - '`neuprint_ROIs`'
  - '`neuprint_get_roiInfo`'
  - '`neuprint_ROI_mesh`'
  - '`neuprint_ROI_hierarchy`'
- title: Neuron manipulation
  desc: ~
  contents:
  - 'neuprint_assign_connectors'
- title: Other queries
  desc: ~
  contents:
  - '`neuprint_dump`'
- title: Low level functions to interact with neuPrint server
  desc: ~
  contents:
  - '`neuprint_fetch_custom`'
  - '`neuprint_list2df`'
  - '`neuprint_get_fields`'