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Pairing a notebook means that Jupytext needs to be aware somehow that the file belongs to a pair. As you mention this information is by default inserted in the notebook itself.
Maybe it is possible to use a configuration file for this. However, all the notebook in the configuration file directory and subdirectory will be paired. Would that be OK for you?
On my side I'll had a test that pairing notebooks through the config file does not change the notebook itself, that's a good test to have.
currently, after I run
it will make a small change to noteboo.ipynb file
is it possible that, to pair an ipynb file without changing it ?
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