From 9e31e1d198bb6076e326d3ca6db61ffeaeb2dd1b Mon Sep 17 00:00:00 2001
From: Cristian Le <cristian.le@mpsd.mpg.de>
Date: Mon, 4 Dec 2023 16:45:31 +0100
Subject: [PATCH] Reconfigure codecov

Signed-off-by: Cristian Le <cristian.le@mpsd.mpg.de>
---
 .github/codecov.yml                    |  5 +----
 .github/workflows/ci.yml               |  6 ++++++
 .github/workflows/step_coverage.yml    |  5 +++++
 .github/workflows/step_tests-conda.yml | 10 ++++++----
 .github/workflows/step_tests-pip.yml   |  5 +++++
 5 files changed, 23 insertions(+), 8 deletions(-)

diff --git a/.github/codecov.yml b/.github/codecov.yml
index 9dc3686b..897013a1 100644
--- a/.github/codecov.yml
+++ b/.github/codecov.yml
@@ -1,9 +1,6 @@
 codecov:
   notify:
-    after_n_builds: 16
-
-comment:
-  after_n_builds: 16
+    wait_for_ci: true
 
 coverage:
   status:
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 54837cd8..6ed5b905 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -39,14 +39,20 @@ jobs:
   test-pip:
     needs: [ pre-commit ]
     uses: ./.github/workflows/step_tests-pip.yml
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
   coverage:
     needs: [ test-pip ]
     uses: ./.github/workflows/step_coverage.yml
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
   test-conda:
     needs: [ test-pip ]
     uses: ./.github/workflows/step_tests-conda.yml
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
 
   test-ui:
     needs: [ test-pip ]
diff --git a/.github/workflows/step_coverage.yml b/.github/workflows/step_coverage.yml
index c97d6bc6..f6aeea59 100644
--- a/.github/workflows/step_coverage.yml
+++ b/.github/workflows/step_coverage.yml
@@ -3,6 +3,10 @@ run-name: Check coverage
 
 on:
   workflow_call:
+    secrets:
+      CODECOV_TOKEN:
+        description: Codecov token
+        required: false
 
 permissions:
   contents: read
@@ -39,6 +43,7 @@ jobs:
       - name: Upload the coverage
         uses: codecov/codecov-action@v3
         with:
+          token: ${{ secrets.CODECOV_TOKEN }}
           flags: ${{ matrix.coverage }}
           fail_ci_if_error: true
           verbose: true
diff --git a/.github/workflows/step_tests-conda.yml b/.github/workflows/step_tests-conda.yml
index b7a137bf..00b3c637 100644
--- a/.github/workflows/step_tests-conda.yml
+++ b/.github/workflows/step_tests-conda.yml
@@ -3,6 +3,10 @@ run-name: Run Conda tests for different OS
 
 on:
   workflow_call:
+    secrets:
+      CODECOV_TOKEN:
+        description: Codecov token
+        required: false
 
 permissions:
   contents: read
@@ -57,13 +61,11 @@ jobs:
           python -m jupyterlab.browser_check
 
       - name: Test with pytest
-        # We use an explicit coverage file otherwise the
-        # codecov action below does not find it
-        run: pytest --cov . --cov-report xml:coverage.xml
+        run: pytest --cov
 
       - name: Upload coverage
         uses: codecov/codecov-action@v3
         with:
+          token: ${{ secrets.CODECOV_TOKEN }}
           fail_ci_if_error: true
           verbose: true
-          files: coverage.xml
diff --git a/.github/workflows/step_tests-pip.yml b/.github/workflows/step_tests-pip.yml
index 595db72c..a776f107 100644
--- a/.github/workflows/step_tests-pip.yml
+++ b/.github/workflows/step_tests-pip.yml
@@ -3,6 +3,10 @@ run-name: Run main tests using Pip
 
 on:
   workflow_call:
+    secrets:
+      CODECOV_TOKEN:
+        description: Codecov token
+        required: false
 
 permissions:
   contents: read
@@ -84,5 +88,6 @@ jobs:
       - name: Upload coverage
         uses: codecov/codecov-action@v3
         with:
+          token: ${{ secrets.CODECOV_TOKEN }}
           fail_ci_if_error: true
           verbose: true