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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<title>MSc in Epidemiology</title>
<link rel="stylesheet" href="wodin.css"/>
<link rel="stylesheet" href="files/index/index.css"/>
</head>
<body>
<div class="main">
<div class="container mt-5">
<h1>MSc in Epidemiology 2024-25</h1>
<p>
Welcome to the new web interface for the MSc course.
</p>
<br>
<h2>Week 2</h2>
<h3>Introduction to R0 and the odin interface</h3>
<p><a href="apps/introduction">Go to app</a></p>
<br>
<h2>Week 4</h2>
<h3>Estimating key parameters - outbreak analysis part 2</h3>
<p><a href="apps/flu">Go to app</a></p>
<p>Supporting files:</p>
<ul>
<li><a href="files/flu/influenza_data.csv">Influenza data</a></li>
<li><a href="files/flu/flu_basic.R">Pennsylvania basic model</a></li>
<li><a href="files/flu/flu_closure.R">Pennsylvania school closure model</a></li>
</ul>
<br>
<h2>Week 5</h2>
<h3>Vector-borne microparasitic infections: Malaria</h3>
<p><a href="apps/vbd-malaria">Go to app</a></p>
<br>
<h2>Week 6</h2>
<h3>Heterogeneity</h3>
<p>There are two apps for this session:</p>
<ul>
<li><a href="apps/heterogeneity-1">1 class model</a></li>
<li><a href="apps/heterogeneity-2">2 class model</a></li>
</ul>
<br>
<h2>Week 7</h2>
<h3>Stochasticity</h3>
<p>There are four apps for this session</p>
<ol>
<li><a href="apps/stochasticity-1">Birth process</a></li>
<li><a href="apps/stochasticity-2">Birth and death</a></li>
<li><a href="apps/stochasticity-3">SIS model</a></li>
<li><a href="apps/stochasticity-4">SIR model</a></li>
</ol>
<br>
<h2>Weeks 8 and 9</h2>
<h3>Design a model for public health</h3>
<p><a href="apps/design">Go to app</a></p>
<br>
<br>
<h2>Term 2: ENTD elective module</h2>
<h3>Onchocerciasis</h3>
<p><a href="apps/vbd-oncho">Go to app</a></p>
<p>Supporting files:</p>
<ul>
<li><a href="files/Oncho_MSc/Oncho_example_1.R">Example 1</a></li>
<li><a href="files/Oncho_MSc/Oncho_example_2.R">Example 2</a></li>
<li><a href="files/Oncho_MSc/Oncho_output_tables.csv">Output tables</a></li>
</ul>
<br>
<h2>Help</h2>
<p>
The following resources were compiled for the short course:
Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases. They are applicable here.
</p>
<p>
A general help file for writing model (<code>odin</code>) code
and navigating the interface can be
found <a href="https://mrc-ide.github.io/infectiousdiseasemodels-2022/guide/">here</a>.
</p>
<p>
For transitioning from this interface into R and Rstudio we
have <a href="https://mrc-ide.github.io/infectiousdiseasemodels-2022/transition/">compiled
a list of useful resources and a simple example</a> to start
the transition
</p>
<div class="float-right">
<img src="files/index/reside_logo.png" style="width:150px; display:block;">
</div>
</div>
</div>
</body>
</html>