DESCRIPTION

Package: epireview
Title: Tools to update and summarise the latest pathogen data from the Pathogen Epidemiology Review Group (PERG)
Version: 1.4.3
Authors@R: c(
    person("Rebecca", "Nash", email = "r.nash@imperial.ac.uk", role = "aut",
           comment = c(ORCID = "0000-0002-5213-4364")),
    person("Christian", "Morgenstern", email = "c.morgenstern@imperial.ac.uk", role = "aut",
           comment = c(ORCID = "0000-0003-3735-1130")),
    person("Cosmo", "Santoni", email = "cosmo.santoni@imperial.ac.uk", role = "aut"),
    person("Sangeeta", "Bhatia", email = "s.bhatia@imperial.ac.uk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6525-101X")),
    person("Richard", "Sheppard", email = "richard.sheppard11@imperial.ac.uk", role = "aut"),
    person("Joseph", "Hicks", email = "j.hicks@imperial.ac.uk", role = "aut"),
    person("Gina", "Cuomo-Dannenburg", role = "aut", comment = c(ORCID = "0000-0001-6821-0352")),
    person("Ruth", "McCabe", role = "aut", comment = c(ORCID = "0000-0002-6368-9103")),
    person("Kelly", "McCain", role = "aut", comment = c(ORCID = "0000-0003-2393-2217")),
    person("Joshua", "Lambert", role = "aut", comment = c(ORCID = "0000-0001-5218-3046")),
    person("Anne", "Cori", role = "aut", comment = c(ORCID = "0000-0002-8443-9162")),
    person("Thomas", "Rawson", role = "aut", comment = c(ORCID = "0000-0001-8182-4279")),
    person("Patrick", "Doohan", role = "aut", comment = c(ORCID = "0000-0001-8076-1106")),
    person("Tristan", "Naidoo", role = "aut", comment = c(ORCID = 0000-0001-9970-2421)),
    person("Shazia", "Ruybal-Pesántez", role = "aut", comment = c(ORCID = "0000-0002-0495-179X")))
Description: Contains the latest open access pathogen data from the Pathogen Epidemiology Review Group (PERG). Tools are available to update pathogen databases with new peer-reviewed data as it becomes available, and to summarise the latest data using tables and figures.
License: MIT + file LICENSE
Depends:
    epitrix,
    ggplot2,
    ggforce,
    R (>= 4.1.0)
Imports:
    dplyr,
    readr,
    scales,
    cli,
    vroom
Suggests:
    knitr,
    lifecycle,
    tidyverse,
    testthat (>= 3.0.0),
    rmarkdown
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://mrc-ide.github.io/epireview/
LazyData: true
BugReports: https://github.com/mrc-ide/epireview/issues