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3 proposed C.1.1 sublineages #44

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corneliusroemer opened this issue Oct 27, 2024 · 0 comments · Fixed by #45
Closed

3 proposed C.1.1 sublineages #44

corneliusroemer opened this issue Oct 27, 2024 · 0 comments · Fixed by #45

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@corneliusroemer
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corneliusroemer commented Oct 27, 2024

There's continued diversification of C.1.1, it might make sense to delineate some lineages, here's a proposal, breaking down the multi-country branches:

Brave Browser 2024-10-27 17 14 02

https://next.nextstrain.org/mpox/lineage-B.1?c=gt-nuc_121394,151847,142797&gmax=152847&gmin=120394&m=div

Adding GISAID-only sequences, the bottom branch (142797) is very common in Brazil (in addition to public sequences from US, Germany, Portugal and Australia). The top two have GISAID-only sequences from the Netherlands (in addition to US/Germany/Portugal - plus Ireland for the middle one).

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