From e9768e2a58d260aaec21883d047b227741f8ed4d Mon Sep 17 00:00:00 2001
From: nicolevasilevsky <vasilevs@ohsu.edu>
Date: Fri, 8 Nov 2019 12:50:22 -0800
Subject: [PATCH] obsolete class MONDO:0004823

addresses #841
---
 src/ontology/mondo-edit.obo | 40 ++++++++++++++++++-------------------
 1 file changed, 19 insertions(+), 21 deletions(-)

diff --git a/src/ontology/mondo-edit.obo b/src/ontology/mondo-edit.obo
index b8ecad8a40..83cd07c134 100644
--- a/src/ontology/mondo-edit.obo
+++ b/src/ontology/mondo-edit.obo
@@ -79443,22 +79443,9 @@ relationship: disease_has_feature HP:0100526 ! Neoplasm of the lung
 
 [Term]
 id: MONDO:0004823
-name: dextrocardia
-def: "A rare congenital abnormality in which the heart is located in the right side of the chest. It is associated with other congenital heart defects." [NCIT:P378]
-subset: gard_rare
-synonym: "heart predominantly in right hemithorax" EXACT [DOID:9565]
-xref: COHD:4100815 {source="MONDO:equivalentTo"}
-xref: DOID:9565 {source="MONDO:equivalentTo"}
-xref: GARD:0001827 {source="MONDO:equivalentTo"}
-xref: HP:0001651 {source="MONDO:otherHierarchy"}
-xref: ICD10:Q24.0 {source="DOID:9565"}
-xref: MESH:D003914 {source="MONDO:equivalentTo", source="DOID:9565"}
-xref: NCIT:C84669 {source="MONDO:equivalentTo", source="MONDO:kboom-pr-0.90/0.79/0.06", source="DOID:9565"}
-xref: SCTID:156925007 {source="DOID:9565"}
-xref: SCTID:27637000 {source="MONDO:relatedTo", source="DOID:9565"}
-xref: UMLS:C0011813 {source="NCIT:C84669", source="MONDO:notFoundInDiseaseSubset", source="GARD:0001827", source="DOID:9565"}
-is_a: MONDO:0005453 {source="DOID:9565", source="MESH:D003914"} ! congenital heart disease
-relationship: disease_has_major_feature HP:0001651 ! Dextrocardia
+name: obsolete dextrocardia
+is_obsolete: true
+replaced_by: MONDO:0015661
 
 [Term]
 id: MONDO:0004824
@@ -307925,18 +307912,29 @@ is_a: MONDO:0016054 {source="Orphanet:1665"} ! cerebral malformation
 [Term]
 id: MONDO:0015661
 name: dextrocardia (disease)
+def: "A rare congenital abnormality in which the heart is located in the right side of the chest. It is associated with other congenital heart defects." [NCIT:P378]
+subset: gard_rare
 subset: ordo_morphological_anomaly {source="Orphanet:1666"}
 synonym: "dextrocardia" EXACT [MONDO:ambiguous]
+synonym: "heart predominantly in right hemithorax" EXACT [DOID:9565]
+xref: COHD:4100815 {source="MONDO:equivalentTo"}
+xref: DOID:9565 {source="MONDO:equivalentTo"}
+xref: GARD:0001827 {source="MONDO:equivalentTo"}
 xref: HP:0001651 {source="MONDO:otherHierarchy", source="ontobio"}
-xref: ICD10:Q24.0 {source="Orphanet:1666", source="ORDO:1666/e"}
+xref: ICD10:Q24.0 {source="Orphanet:1666", source="ORDO:1666/e", source="DOID:9565"}
 xref: ICD9:746.87 {source="MONDO:relatedTo", source="i2s"}
 xref: MedDRA:10012592 {source="Orphanet:1666", source="ORDO:1666/e"}
-xref: MESH:D003914 {source="MONDO:relatedTo", source="Orphanet:1666", source="ORDO:1666/e"}
+xref: MESH:D003914 {source="MONDO:equivalentTo", source="Orphanet:1666", source="ORDO:1666/e", source="DOID:9565"}
+xref: MONDO:0004823 {source="MONDO:obsoleteEquivalent"}
+xref: NCIT:C84669 {source="MONDO:equivalentTo", source="MONDO:kboom-pr-0.90/0.79/0.06", source="DOID:9565"}
 xref: Orphanet:1666 {source="MONDO:equivalentTo"}
-xref: SCTID:27637000 {source="MONDO:kboom-pr-0.88/0.76/0.05", source="MONDO:equivalentTo"}
-xref: UMLS:C0011813 {source="Orphanet:1666", source="MONDO:notFoundInDiseaseSubset", source="ORDO:1666/e"}
+xref: SCTID:156925007 {source="DOID:9565"}
+xref: SCTID:27637000 {source="MONDO:relatedTo", source="MONDO:kboom-pr-0.88/0.76/0.05", source="MONDO:equivalentTo", source="DOID:9565"}
+xref: UMLS:C0011813 {source="NCIT:C84669", source="Orphanet:1666", source="MONDO:notFoundInDiseaseSubset", source="ORDO:1666/e", source="GARD:0001827", source="DOID:9565"}
 xref: UMLS:C0265863 {source="Orphanet:1666", source="MONDO:notFoundInDiseaseSubset", source="ORDO:1666/e"}
+is_a: MONDO:0005453 {source="DOID:9565", source="MESH:D003914"} ! congenital heart disease
 is_a: MONDO:0018677 {source="Orphanet:1666"} ! visceral heterotaxy
+relationship: disease_has_major_feature HP:0001651 ! Dextrocardia
 
 [Term]
 id: MONDO:0015662
@@ -403356,7 +403354,7 @@ synonym: "situs inversus totalis" RELATED [GARD:0006268]
 xref: GARD:0006268 {source="MONDO:equivalentTo"}
 xref: UMLS:C1395317 {source="MONDO:notFoundInDiseaseSubset", source="GARD:0006268"}
 is_a: MONDO:0002254 {source="MONDO:cjm"} ! syndromic disease
-relationship: disease_has_feature MONDO:0004823 ! dextrocardia
+relationship: disease_has_feature MONDO:0004823 ! obsolete dextrocardia
 relationship: disease_has_feature MONDO:0010029 {source="MONDO:cjm"} ! situs inversus
 property_value: seeAlso https://rarediseases.info.nih.gov/diseases/6268/dextrocardia-with-situs-inversus xsd:anyURI {source="GARD:0006268"}