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changes to meet Biothings plugin standard #1

Merged
merged 11 commits into from
Aug 10, 2022
Merged

changes to meet Biothings plugin standard #1

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701b560
rename variables and use a file handler when loading the drug_data
erikyao Aug 9, 2022
7e7ec1c
randomly pick 100 documents from the original sample documents
erikyao Aug 9, 2022
ede676b
rename the sample output file
erikyao Aug 9, 2022
d6e2b8e
rename field name 'ddinterid_a' and 'ddinterid_b' to 'ddinter'
erikyao Aug 10, 2022
1858dba
list all files to download
erikyao Aug 10, 2022
e89825a
add version module
erikyao Aug 10, 2022
ee8fe55
Create README.md
erikyao Aug 10, 2022
3162bc3
add license metadata
erikyao Aug 10, 2022
c987294
Revert "rename field name 'ddinterid_a' and 'ddinterid_b' to 'ddinter'"
erikyao Aug 10, 2022
245fd28
Revert "rename variables and use a file handler when loading the drug…
erikyao Aug 10, 2022
748d117
Merge branch 'mnarayan1:main' into main
erikyao Aug 10, 2022
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5 changes: 5 additions & 0 deletions README.md
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# Data Plugin

[_DDInter_](http://ddinter.scbdd.com/) is a comprehensive, professional, and open-access database specific to Drug-Drug INTeractions. The [download data](http://ddinter.scbdd.com/download/) are published under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International license (see [terms](http://ddinter.scbdd.com/terms/)).

This repo is the Biothings plugin for _DDInter_. The requirements were discussed in [pending.api - Issue#68](https://github.com/biothings/pending.api/issues/68). The data files in use are the eight `csv` datasheets available in the [download page](http://ddinter.scbdd.com/download/), and a [`drug_data.json`](drug_data.json) generated by [`webscraper.py`](webscraper.py).
1 change: 0 additions & 1 deletion ddinter_data.json
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1 change: 1 addition & 0 deletions ddinter_sample_output.json
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16 changes: 14 additions & 2 deletions manifest.json
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@@ -1,10 +1,22 @@
{
"version": "0.2",
"__metadata__": {
"url": "http://ddinter.scbdd.com/"
"url": "http://ddinter.scbdd.com/",
"license_url": "https://creativecommons.org/licenses/by-nc-sa/4.0/",
"license": "CC BY-NC-SA 4.0"
},
"dumper" : {
"data_url" : ["http://ddinter.scbdd.com/download/"],
"data_url" : [
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_A.csv",
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_B.csv",
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_D.csv",
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_H.csv",
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_L.csv",
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_P.csv",
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_R.csv",
"http://ddinter.scbdd.com/static/media/download/ddinter_downloads_code_V.csv",
"http://localhost:8080/dataupload/mysrc/drug_data.json"
],
"uncompress" : false,
"release": "version:get_release"
},
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4 changes: 4 additions & 0 deletions version.py
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def get_release(self):
# As shown in the bottom of http://ddinter.scbdd.com/
# Current Release: DDInter 1.0 | Last update: 2020-09-04
return "1.0"