This repository was created to host vignettes and scripts to perform polyploid genetic analysis, mostly using MAPpoly.
- Building a genetic map in an hexaploid full-sib population using MAPpoly
- Building a genetic map using potato genotype data from SolCAP
- Dataset examples
- Hexaploid sweetpotato VCF dataset (Beauregard x Tanzania) obtained using VCF2SM
- Hexaploid simulation with dosage call in MAPpoly format
- Hexaploid simulation with dosage probabilities in MAPpoly format
- Tetraploid potato with dosage call in MAPpoly format
- Tetraploid potato with dosage call in CSV format
- Tetraploid potato with dosage probabilities in MAPpoly format