pyproject.toml

[build-system]
requires = ["setuptools>=42", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "protxlstm"
version = "0.1.0"
description = "xLSTM-based homology-aware protein language model."
readme = "README.md" 
requires-python = ">=3.9"
license = {text = "MIT"}
authors = [
    {name = "Niklas Schmidinger", email = "schmidinger@ml.jku.at"},
    {name = "Lisa Schneckenreiter", email = "schneckenreiter@ml.jku.at"},
    {name = "Sohvi Luukkonen", email = "luukkonen@ml.jku.at"},
    {name = "Pieter-Jan Hoedt", email = "hoedt@ml.jku.at"},
]
keywords = ["protein language model", "xLSTM"]
dependencies = [
    "accelerate>=0.26.0",
    "biopython",
    "bottleneck",
    "dacite",
    "ipykernel",
    "mamba_ssm",
    "matplotlib",
    "numpy<2.0",
    "omegaconf",
    "pandas",
    "pyhmmer",
    "rich",
    "seaborn",
    "torchmetrics",
    "torch==2.2.2",
    "tqdm",
    "transformers==4.44.2",
    "tueplots",
    "wandb"
    ]

# Optional: URLs related to the project
[project.urls]
# repository = "https://github.com/yourgithubusername/your-repo"

[tool.setuptools]
packages = ["protxlstm"]