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<!DOCTYPE html>
<html>
<head>
<title>References - ViralGeneClock</title>
<style>
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h1 {
color: black;
margin: 20px;
text-align: center;
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.references {
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color: white;
text-align: center;
padding: 8px 20px;
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</style>
</head>
<body>
<nav>
<a href="/" class="logo"><img src="{{ url_for('static', filename='logo.png') }}"></a>
<a href="/about">About</a>
<a href="/references">References</a>
</nav>
<h1>References: </h1>
<div class="references">
<ul>
<li>Saitou, N., & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. <em>Molecular Biology and Evolution, 4(4),</em> 406–425. <a href="https://doi.org/10.1093/oxfordjournals.molbev.a040454">https://doi.org/10.1093/oxfordjournals.molbev.a040454</a></li>
<li>Kuhner, M. K., & Felsenstein, J. (1994). A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. <em>Molecular Biology and Evolution, 11(3),</em> 459–468. <a href="https://doi.org/10.1093/oxfordjournals.molbev.a040126">https://doi.org/10.1093/oxfordjournals.molbev.a040126</a></li>
<li>Seemann, T. (2014). Prokka: rapid prokaryotic genome annotation. <em>Bioinformatics (Oxford, England), 30(14),</em> 2068–2069. <a href="https://doi.org/10.1093/bioinformatics/btu153">https://doi.org/10.1093/bioinformatics/btu153</a></li>
<li>Hyatt, D., et al. (2010). Prodigal: prokaryotic gene recognition and translation initiation site identification. <em>BMC Bioinformatics, 11(1).</em> <a href="https://doi.org/10.1186/1471-2105-11-119">https://doi.org/10.1186/1471-2105-11-119</a></li>
<li>Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. <em>Nucleic Acids Research, 32(5),</em> 1792–1797. <a href="https://doi.org/10.1093/nar/gkh340">https://doi.org/10.1093/nar/gkh340</a></li>
<li>Cock, P. J. A., et al. (2009). Biopython: freely available Python tools for computational molecular biology and bioinformatics. <em>Bioinformatics (Oxford, England), 25(11),</em> 1422–1423. <a href="https://doi.org/10.1093/bioinformatics/btp163">https://doi.org/10.1093/bioinformatics/btp163</a></li>
<li>Flask documentation. <a href="https://readthedocs.org/projects/flask/">https://readthedocs.org/projects/flask/</a>. Retrieved April 6, 2024.</li>
<li>Flask-mail documentation. <a href="https://pythonhosted.org/Flask-Mail/">https://pythonhosted.org/Flask-Mail/</a>. Retrieved May 1, 2024.</li>
<li>AJAX introduction. <a href="https://www.w3schools.com/js/js_ajax_intro.asp">https://www.w3schools.com/js/js_ajax_intro.asp</a>. Retrieved May 1, 2024.</li>
<li>Neighbor joining project. <a href="https://www.github.com/anicksaha/neighbor_joining">https://www.github.com/anicksaha/neighbor_joining</a></li>
</ul>
</div>
</body>
</html>