[BUG] Summarize bin collection selected from anvio interface keeps summarizing all clusters. (leave the '[BUG]' part)

[Manso002]

I try to summarize my bin selections but it keeps summarizing all clusters.

anvi'o version = anvio-v8 marie

MacOS

Detailed description of the issue

I am selecting bins from the anvio interface on my pangenome. When i try to summarize the info of those bins, it keeps summarizing it as if it was "default collection" and it summarizes all clusters in my pangenome.
When i run ----list-collections or anvi-show-collections-and-bins, collection ID appears. However, when i run anvi-summarize -C COLLECTION, it does not summarize the collection, but all clusters. As you can see, the html output identifies 1 bin but summarizes all clusters, even if the original collection "test" had only 160 clusters and 2 genomes selected.
I may be missing something.
Hope you can help me,
Thanks for such amazing tool,
Carlos

[FlorianTrigodet]

Hey @Manso002,
Indeed anvi-summarize will summarize all GCs from your pangenome. That's the expected behavior.
In the main output table (*gene_clusters_summary.txt.gz), you will find a column 'bin_name' which you can use to extract the genes in GCs present in your bins.