Collection of helper functions to make large scale single cell analysis more bearable. Examples include integration with scVI, gene score computations (eigengenes etc.) or estimating the effect sizes of introduced perturbations.
To install simply clone the repository and run pip install . from within the cloned directory like so
git clone git@github.com:menchelab/sctools.git
cd sctools
pip install .
If you use it please consider citing Neuwirth & Malzl et al.