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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

[1.0.0] - 2024-11-24

Added

  • Initial release of nf-varcall, a Nextflow-based pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.
  • Modules: data_qc, pbmm2, deepvariant, filter_variants, merge_vcf, vep, alignment_summary, report.
  • Configuration: Support for Docker containers to ensure reproducibility.
  • README.md for usage instructions, input/output specifications, and configuration options.
  • Makefile to setup the VEP cache (homo_sapiens_merged_vep_113_GRCh38) and example data.