v0.6.5

ViennaRNA v0.6.5

Diff since v0.6.4

v0.6.4

ViennaRNA v0.6.4

Diff since v0.6.3

Closed issues:

• Feature request: Alifold (#7)

v0.6.3

ViennaRNA v0.6.3

• support for alifold mode (comparative folding with a MSA)

Diff since v0.6.2

v0.6.2

ViennaRNA v0.6.2

Diff since v0.6.1

v0.6.1

ViennaRNA v0.6.1

Changes since v0.5.0:

• experimental plot_structure and plot_structure_makie functions to draw secondary structures with Cairo
• support for circular strands
• initial support for multiple strands (no concentration calculation yet)
• added heat_capacity function
• plot_coords defaults to the 'simple' layout algorithm

Diff since v0.6.0

v0.6.0

ViennaRNA v0.6.0

Diff since v0.5.0

Closed issues:

• Basepair probability vector and plotting RNA structures (#3)

Merged pull requests:

• Add plot_structure function using Makie.jl (#4) (@timoleistner)

v0.5.0

ViennaRNA v0.5.0

• bpp now returns a symmetric matrix of basepair probabilities
• new prob_of_basepairs function that calculates the probability of every basepair or unpaired base for a (sequence, structure) pair
• new plot_structure function that implements a simple form of secondary structure plotting with base coloring (see issue #3)

Diff since v0.4.1

v0.4.1

ViennaRNA v0.4.1

Diff since v0.4.0

v0.4.0

ViennaRNA v0.4.0

• energy parameter set and temperature used in the calculations can be set for a FoldCompound
• uniq_ML argument to FoldCompound is now of type Bool

Diff since v0.3.1

v0.3.1

ViennaRNA v0.3.1

Diff since v0.3.0

• fix memory leaks in pbacktrack, subopt, subopt_zuker

Closed issues:

• Fails to precompile on CI (#1)