diff --git a/manuscript.html b/manuscript.html
index 2b6ad17c..3fc55906 100644
--- a/manuscript.html
+++ b/manuscript.html
@@ -6,7 +6,7 @@
   <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
   <meta name="author" content="John Doe" />
   <meta name="author" content="Jane Roe" />
-  <meta name="dcterms.date" content="2019-08-04" />
+  <meta name="dcterms.date" content="2019-08-09" />
   <meta name="keywords" content="markdown, publishing, manubot" />
   <title>Manuscript Title</title>
   <style>
@@ -86,7 +86,7 @@
 <header id="title-block-header">
 <h1 class="title">Manuscript Title</h1>
 </header>
-<p><small><em> This manuscript (<a href="https://manubot.github.io/rootstock/v/579547d8140dd01ddf652dfd4dbeb6c4a2c4b0eb/">permalink</a>) was automatically generated from <a href="https://github.com/manubot/rootstock/tree/579547d8140dd01ddf652dfd4dbeb6c4a2c4b0eb">manubot/rootstock@579547d</a> on August 4, 2019. </em></small></p>
+<p><small><em> This manuscript (<a href="https://manubot.github.io/rootstock/v/bc094bd3d6cec6935298b4acf50e45ad55bf45c8/">permalink</a>) was automatically generated from <a href="https://github.com/manubot/rootstock/tree/bc094bd3d6cec6935298b4acf50e45ad55bf45c8">manubot/rootstock@bc094bd</a> on August 9, 2019. </em></small></p>
 <h2 id="authors">Authors</h2>
 <ul>
 <li><p><strong>John Doe</strong><br> <img src="images/orcid.svg" alt="ORCID icon" class="inline_icon" /> <a href="https://orcid.org/XXXX-XXXX-XXXX-XXXX">XXXX-XXXX-XXXX-XXXX</a> · <img src="images/github.svg" alt="GitHub icon" class="inline_icon" /> <a href="https://github.com/johndoe">johndoe</a> · <img src="images/twitter.svg" alt="Twitter icon" class="inline_icon" /> <a href="https://twitter.com/johndoe">johndoe</a><br> <small> Department of Something, University of Whatever · Funded by Grant XXXXXXXX </small></p></li>
diff --git a/manuscript.md b/manuscript.md
index 6309080a..d523b9d8 100644
--- a/manuscript.md
+++ b/manuscript.md
@@ -2,7 +2,7 @@
 author-meta:
 - John Doe
 - Jane Roe
-date-meta: '2019-08-04'
+date-meta: '2019-08-09'
 keywords:
 - markdown
 - publishing
@@ -18,10 +18,10 @@ title: Manuscript Title
 
 <small><em>
 This manuscript
-([permalink](https://manubot.github.io/rootstock/v/579547d8140dd01ddf652dfd4dbeb6c4a2c4b0eb/))
+([permalink](https://manubot.github.io/rootstock/v/bc094bd3d6cec6935298b4acf50e45ad55bf45c8/))
 was automatically generated
-from [manubot/rootstock@579547d](https://github.com/manubot/rootstock/tree/579547d8140dd01ddf652dfd4dbeb6c4a2c4b0eb)
-on August 4, 2019.
+from [manubot/rootstock@bc094bd](https://github.com/manubot/rootstock/tree/bc094bd3d6cec6935298b4acf50e45ad55bf45c8)
+on August 9, 2019.
 </em></small>
 
 ## Authors
diff --git a/manuscript.pdf b/manuscript.pdf
index 5b7e5d98..18fa2cdf 100644
Binary files a/manuscript.pdf and b/manuscript.pdf differ
diff --git a/references.json b/references.json
index 45c3fc44..339f5086 100644
--- a/references.json
+++ b/references.json
@@ -438,7 +438,7 @@
         [
           "2019",
           8,
-          4
+          9
         ]
       ]
     },
diff --git a/variables.json b/variables.json
index 06869784..b96e112e 100644
--- a/variables.json
+++ b/variables.json
@@ -1,5 +1,5 @@
 {
-  "date": "August 4, 2019",
+  "date": "August 9, 2019",
   "authors": [
     {
       "github": "johndoe",
@@ -46,7 +46,7 @@
     "repo_slug": "manubot/rootstock",
     "repo_owner": "manubot",
     "repo_name": "rootstock",
-    "commit": "579547d8140dd01ddf652dfd4dbeb6c4a2c4b0eb"
+    "commit": "bc094bd3d6cec6935298b4acf50e45ad55bf45c8"
   },
   "manuscript_stats": {
     "reference_counts": {