diff --git a/filebeat/input/filestream/input_integration_test.go b/filebeat/input/filestream/input_integration_test.go
index a2e64ee9fec..cfbbb8085a8 100644
--- a/filebeat/input/filestream/input_integration_test.go
+++ b/filebeat/input/filestream/input_integration_test.go
@@ -196,6 +196,7 @@ func TestFilestreamCloseEOF(t *testing.T) {
 
 // test_empty_lines from test_harvester.py
 func TestFilestreamEmptyLine(t *testing.T) {
+	t.Skip("Flaky test https://github.com/elastic/beats/issues/27585")
 	env := newInputTestingEnvironment(t)
 
 	testlogName := "test.log"
@@ -693,6 +694,7 @@ func TestFilestreamTruncateCheckOffset(t *testing.T) {
 }
 
 func TestFilestreamTruncateBlockedOutput(t *testing.T) {
+	t.Skip("Flaky test https://github.com/elastic/beats/issues/27085")
 	env := newInputTestingEnvironment(t)
 	env.pipeline = &mockPipelineConnector{blocking: true}