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env-scanpy.yml
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name: scanpy
channels:
- conda-forge
- bioconda
- defaults
- r
dependencies:
- blas=1.0=mkl
- ca-certificates=2018.11.29=ha4d7672_0
- cairo=1.14.12=h80bd089_1005
- certifi=2018.11.29=py36_1000
- cycler=0.10.0=py_1
- dbus=1.13.2=h714fa37_1
- expat=2.2.5=hf484d3e_1002
- fontconfig=2.13.1=h2176d3f_1000
- freetype=2.9.1=h94bbf69_1005
- gettext=0.19.8.1=h9745a5d_1001
- glib=2.56.2=had28632_1001
- gmp=6.1.2=hf484d3e_1000
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb453b48_1
- hdf5=1.10.4=nompi_h11e915b_1105
- icu=58.2=hf484d3e_1000
- igraph=0.7.1=h2166141_1005
- intel-openmp=2019.1=144
- jpeg=9c=h14c3975_1001
- kiwisolver=1.0.1=py36h6bb024c_1002
- libffi=3.2.1=hf484d3e_1005
- libgcc-ng=7.3.0=hdf63c60_0
- libgfortran-ng=7.2.0=hdf63c60_3
- libiconv=1.15=h14c3975_1004
- libpng=1.6.36=h84994c4_1000
- libstdcxx-ng=7.3.0=hdf63c60_0
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.8=h143f9aa_1005
- llvmlite=0.26.0=py36hdbcaa40_1000
- loompy=2.0.10=py_0
- louvain=0.6.1=py36hf484d3e_2
- matplotlib=3.0.2=py36_1002
- matplotlib-base=3.0.2=py36h167e16e_1002
- mkl=2019.1=144
- mkl_fft=1.0.10=py36h14c3975_1
- mkl_random=1.0.2=py36h637b7d7_2
- ncurses=6.1=hf484d3e_1002
- numba=0.41.0=py36h637b7d7_1000
- numpy=1.15.4=py36h7e9f1db_0
- numpy-base=1.15.4=py36hde5b4d6_0
- openblas=0.3.3=h9ac9557_1001
- openssl=1.1.1a=h14c3975_1000
- pandas=0.24.1=py36hf484d3e_0
- patsy=0.5.1=py_0
- pcre=8.42=h439df22_0
- pip=19.0.1=py36_0
- pixman=0.34.0=h14c3975_1003
- pthread-stubs=0.4=h14c3975_1001
- pycairo=1.18.0=py36h1b9232e_1000
- pyparsing=2.3.1=py_0
- pyqt=5.6.0=py36h13b7fb3_1008
- python=3.6.8=h0371630_0
- python-dateutil=2.8.0=py_0
- python-igraph=0.7.1.post6=py36h14c3975_1005
- pytz=2018.9=py_0
- qt=5.6.3=h8bf5577_3
- readline=7.0=hf8c457e_1001
- scikit-learn=0.20.2=py36hd81dba3_0
- scipy=1.2.0=py36h7c811a0_0
- seaborn=0.9.0=py_0
- setuptools=40.7.3=py36_0
- sip=4.18.1=py36hf484d3e_1000
- six=1.12.0=py36_1000
- sqlite=3.26.0=h67949de_1000
- statsmodels=0.9.0=py36h3010b51_1000
- tk=8.6.9=h84994c4_1000
- tornado=5.1.1=py36h14c3975_1000
- typing=3.6.4=py36_0
- wheel=0.32.3=py36_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.9=h14c3975_1004
- xorg-libsm=1.2.3=h4937e3b_1000
- xorg-libx11=1.6.7=h14c3975_1000
- xorg-libxau=1.0.8=h14c3975_1006
- xorg-libxdmcp=1.1.2=h14c3975_1007
- xorg-libxext=1.3.3=h14c3975_1004
- xorg-libxrender=0.9.10=h14c3975_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- zlib=1.2.11=h14c3975_1004
- pip:
- anndata==0.6.18
- decorator==4.3.2
- fa2==0.3.5
- h5py==2.9.0
- joblib==0.13.1
- natsort==6.0.0
- networkx==2.2
- numexpr==2.6.9
- scanpy==1.4
- tables==3.4.4
- tqdm==4.30.0
prefix: /group/bioi1/luke/miniconda2/envs/scanpy